RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA914897" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA914897 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28792912 28792912 PRJNA914897_P_NODE_30207_length_287_cov_1.317757_g29783_i0 PRJNA914897 30207 287 1.317757 3.78196259 Fidelibacterota bacterium 2026760 Bacteria Bacteria 45.8 0.0053   NR GIS03688.1 2026760 g29783 i0 44.7 0.825783972125436 47 26 49.1 0 143 283 40 86 GIS03688.1 MAG: hypothetical protein CM15mP106_1350 [Fidelibacterota bacterium] diamond 237 45.8 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
29613628 29613628 PRJNA914897_P_NODE_7090_length_735_cov_1.353474_g6708_i0 PRJNA914897 7090 735 1.353474 9.9480339 Fidelibacterota bacterium 2026760 Bacteria Bacteria 52.4 7.76e-4   NR MBT3589453.1 2026760 g6708 i0 73.7 0.946938775510204 38 9 15.5 1 694 581 5 41 MBT3589453.1 adenylosuccinate lyase [Fidelibacterota bacterium] diamond 696 52.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30341010 30341010 PRJNA914897_P_NODE_11132_length_557_cov_2.723140_g10712_i0 PRJNA914897 11132 557 2.72314 15.1678898 Fidelibacterota bacterium 2026760 Bacteria Bacteria 45.8 0.0162   NR MBI89257.1 2026760 g10712 i0 26.7 1.2818671454219 116 69 56.6 3 206 520 6 116 MBI89257.1 hypothetical protein [Fidelibacterota bacterium] diamond 714 45.8 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;