RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA914897" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA914897 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2526641 2526641 PRJNA914897_P_NODE_38222_length_248_cov_1.320000_g37798_i0 PRJNA914897 38222 248 1.32 3.2736 Leptotrichia 32067 Bacteria Bacteria 414 2.48e-111   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g37798 i0 97.166 356.318548387097 247 4 100 3 1 245 2288407 2288652 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 88367 418 0.990430622009569 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
18746496 18746496 PRJNA914897_P_NODE_30735_length_284_cov_1.521327_g30311_i0 PRJNA914897 30735 284 1.521327 4.32056868 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 520 5.98e-143   NTclustered gi|1276716588|gb|CP024703.1| 2663009 g30311 i0 99.648 473.693661971831 284 1 100 0 1 284 1342315 1342032 Fusobacterium pseudoperiodonticum strain KCOM 2305 chromosome, complete genome blastn 134529 520 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;