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contig_metadata

22 rows where bioproject = "PRJNA914897", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 22 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 22 ✖

bioproject 1

  • PRJNA914897 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7273077 7273077 PRJNA914897_P_NODE_26606_length_313_cov_1.845833_g26182_i0 PRJNA914897 26606 313 1.845833 5.77745729 Verrucomicrobium spinosum 2736 Bacteria Bacteria 224 5.86e-54   NTclustered gi|12583973|gb|AF245377.1| 240016 g26182 i0 83.267 52.6837060702875 251 34 79 8 68 313 190 437 Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence blastn 16490 224 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
17473206 17473206 PRJNA914897_P_NODE_41814_length_242_cov_1.284024_g41390_i0 PRJNA914897 41814 242 1.284024 3.10733808 Luteolibacter luteus 2728835 Bacteria Bacteria 91.6 4.62e-14   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g41390 i0 91.176 6.85123966942149 68 4 27 2 37 102 3804777 3804710 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 1658 91.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
27372530 27372530 PRJNA914897_P_NODE_22243_length_353_cov_1.300000_g21819_i0 PRJNA914897 22243 353 1.3 4.589 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 99.4 1.87e-21   NR MDB6029266.1 2026801 g21819 i0 49.5 4.68271954674221 99 49 84.1 1 299 3 426 523 MDB6029266.1 lipid exporter, fused ATPase and inner rane subunit MsbA [Verrucomicrobiales bacterium] diamond 1653 99.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
27720040 27720040 PRJNA914897_P_NODE_9304_length_625_cov_2.943841_g8889_i0 PRJNA914897 9304 625 2.943841 18.39900625 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52 3.52e-4   NR MBS0655522.1 2026799 g8889 i0 41.1 0.84 56 29 26.9 1 502 335 74 125 MBS0655522.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 525 52 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28003934 28003934 PRJNA914897_P_NODE_6705_length_758_cov_29.423358_g6329_i0 PRJNA914897 6705 758 29.423358 223.02905364 Methylacidiphilum sp. Yel 1847730 Bacteria Bacteria 50.1 0.00328   NR WP_134391042.1 1847730 g6329 i0 28.3 0.546174142480211 138 85 49.5 5 583 209 33 169 WP_134391042.1 class I SAM-dependent methyltransferase [Methylacidiphilum sp. Yel] diamond 414 50.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Methylacidiphilum sp. Yel
28192944 28192944 PRJNA914897_P_NODE_30466_length_286_cov_0.995305_g30042_i0 PRJNA914897 30466 286 0.995305 2.8465723 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 61.6 1.42e-8   NR HYG84357.1 2499141 g30042 i0 39.3 0.881118881118881 84 51 88.1 0 31 282 196 279 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 252 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28231799 28231799 PRJNA914897_P_NODE_19486_length_386_cov_0.824281_g19064_i0 PRJNA914897 19486 386 0.824281 3.18172466 Roseibacillus 518755 Bacteria Bacteria 53.1 4.4e-5   NR MBQ97065.1 2024856 g19064 i0 28.3 2.82901554404145 120 86 93.3 0 25 384 1068 1187 MBQ97065.1 hypothetical protein [Roseibacillus sp.] diamond 1092 53.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseibacillus Roseibacillus sp.
28800202 28800202 PRJNA914897_P_NODE_36827_length_251_cov_0.865169_g36403_i0 PRJNA914897 36827 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 145 1.93e-38   NR MEO6245189.1 2006848 g36403 i0 79.5 1.9840637450199201 83 17 99.2 0 2 250 640 722 MEO6245189.1 HEAT repeat domain-containing protein [Opitutaceae bacterium] diamond 498 146 0.993150684931507 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
28887664 28887664 PRJNA914897_P_NODE_2328_length_1266_cov_2.960604_g2119_i0 PRJNA914897 2328 1266 2.960604 37.48124664 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 88.2 4.77e-16   NR MEO5753320.1 2201154 g2119 i0 30.3 0.462085308056872 195 108 42.4 6 1200 664 34 216 MEO5753320.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 585 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28919190 28919190 PRJNA914897_P_NODE_41228_length_243_cov_1.035294_g40804_i0 PRJNA914897 41228 243 1.035294 2.51576442 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 42.4 0.0486   NR HEV2328609.1 2499141 g40804 i0 41.4 0.716049382716049 58 31 71.6 1 16 189 143 197 HEV2328609.1 GGDEF domain-containing protein [Verrucomicrobiia bacterium] diamond 174 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29266485 29266485 PRJNA914897_P_NODE_32369_length_275_cov_0.777228_g31945_i0 PRJNA914897 32369 275 0.777228 2.137377 Verrucomicrobiaceae bacterium NT6N 2979115 Bacteria Bacteria 124 6.09e-32   NR BDS05028.1 2979115 g31945 i0 69.7 5.82545454545455 89 27 97.1 0 6 272 196 284 BDS05028.1 alcohol dehydrogenase [Verrucomicrobiaceae bacterium NT6N] diamond 1602 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Oceaniferula Oceaniferula spumae
29652566 29652566 PRJNA914897_P_NODE_41110_length_243_cov_1.747059_g40686_i0 PRJNA914897 41110 243 1.747059 4.24535337 Bacteria 2 Bacteria Bacteria 50.4 6.76e-5   NR WP_338688151.1 490095 g40686 i0 45.1 3.23456790123457 71 26 87.7 3 242 30 215 272 WP_338688151.1 aldose epimerase family protein [Haloferula helveola] diamond 786 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula helveola
29676793 29676793 PRJNA914897_P_NODE_750_length_1830_cov_5.412066_g658_i0 PRJNA914897 750 1830 5.412066 99.0408078 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 402 3.7299999999999997e-129   NR HYG84357.1 2499141 g658 i0 50.6 0.80327868852459 490 217 76.7 8 280 1683 41 527 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 1470 402 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29771676 29771676 PRJNA914897_P_NODE_1851_length_1372_cov_7.587375_g1674_i0 PRJNA914897 1851 1372 7.587375 104.098785 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 75.9 1.16e-11   NR MEO5753320.1 2201154 g1674 i0 30 0.459183673469388 210 119 42.4 6 35 616 23 220 MEO5753320.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 630 75.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29993056 29993056 PRJNA914897_P_NODE_35971_length_254_cov_1.027624_g35547_i0 PRJNA914897 35971 254 1.027624 2.61016496 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 57.8 2.14e-7   NR HYG84357.1 2499141 g35547 i0 34.5 0.992125984251969 84 55 99.2 0 252 1 351 434 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 252 57.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30277661 30277661 PRJNA914897_P_NODE_27172_length_309_cov_0.987288_g26748_i0 PRJNA914897 27172 309 0.987288 3.05071992 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 79 1.57e-14   NR HYG84357.1 2499141 g26748 i0 49.4 1.57281553398058 81 41 78.6 0 246 4 338 418 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 486 79 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30277667 30277667 PRJNA914897_P_NODE_33432_length_268_cov_2.815385_g33008_i0 PRJNA914897 33432 268 2.815385 7.5452318 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 61.6 1.16e-9   NR MDP6307261.1 2026799 g33008 i0 48.4 0.716417910447761 64 33 71.6 0 265 74 4 67 MDP6307261.1 ankyrin repeat domain-containing protein [Verrucomicrobiota bacterium] diamond 192 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30435585 30435585 PRJNA914897_P_NODE_4493_length_947_cov_2.184211_g4176_i0 PRJNA914897 4493 947 2.184211 20.68447817 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 71.6 9.39e-10   NR HYG84357.1 2499141 g4176 i0 31.6 0.500527983104541 158 90 49.4 3 745 278 115 256 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 474 71.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30498506 30498506 PRJNA914897_P_NODE_11693_length_540_cov_1.633833_g11273_i0 PRJNA914897 11693 540 1.633833 8.8226982 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 50.4 4.05e-4   NR MDQ6655298.1 2026799 g11273 i0 30.6 0.616666666666667 111 72 61.7 2 39 371 32 137 MDQ6655298.1 FHA domain-containing protein [Verrucomicrobiota bacterium] diamond 333 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31794319 31794319 PRJNA914897_P_NODE_30037_length_288_cov_1.241860_g29613_i0 PRJNA914897 30037 288 1.24186 3.5765568 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 126 1.3499999999999998e-31   NR HYG84357.1 2499141 g29613 i0 65.5 0.90625 87 30 90.6 0 285 25 218 304 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 261 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31833346 31833346 PRJNA914897_P_NODE_32917_length_271_cov_1.757576_g32493_i0 PRJNA914897 32917 271 1.757576 4.76303096 Pseudomonadati 3379134 Bacteria Bacteria 65.5 5.22e-10   NR MBS0652631.1 2026799 g32493 i0 48 1.66051660516605 75 33 79.7 3 255 40 192 263 MBS0652631.1 glycosyltransferase family 2 protein [Verrucomicrobiota bacterium] diamond 450 65.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32150008 32150008 PRJNA914897_P_NODE_26718_length_312_cov_1.828452_g26294_i0 PRJNA914897 26718 312 1.828452 5.70477024 Pseudomonadati 3379134 Bacteria Bacteria 63.9 1.78e-9   NR HUF62473.1 2026801 g26294 i0 48.1 2.08653846153846 52 25 50 1 225 70 22 71 HUF62473.1 thioredoxin [Verrucomicrobiales bacterium] diamond 651 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;