RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA914897", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Giovannoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Giovannoniibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA914897 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29993069 29993069 PRJNA914897_P_NODE_6671_length_761_cov_2.683140_g6295_i0 PRJNA914897 6671 761 2.68314 20.4186954 Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_ 2053557 Bacteria Bacteria 47.4 0.0444   NR OGF66689.1 1798332 g6295 i0 26.1 0.634691195795007 161 105 61.1 4 728 264 487 639 OGF66689.1 MAG: sodium-translocating pyrophosphatase [Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_43_32] diamond 483 47.4 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_43_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;