RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA911178" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA911178 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4720379 4720379 PRJNA911178_P_NODE_171844_length_288_cov_1.158140_g169371_i0 PRJNA911178 171844 288 1.15814 3.3354432 Halorubrum sp. CBA1229 1853699 Archaea Archaea 462 1.04e-125   NTclustered gi|1861358827|gb|CP054585.1| 1853699 g169371 i0 96.429 8.16666666666667 280 10 97 0 9 288 1483314 1483593 Halorubrum sp. CBA1229 chromosome, complete genome blastn 2352 462 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. CBA1229
5996473 5996473 PRJNA911178_P_NODE_52505_length_479_cov_1.312808_g50070_i0 PRJNA911178 52505 479 1.312808 6.28835032 Methanobacterium palustre 2171 Archaea Archaea 800 0   NTclustered gi|584298062|gb|KF882001.1| 2171 g50070 i0 96.875 131.254697286013 480 11 99 2 4 479 599 1078 Methanobacterium palustre strain F 23S ribosomal RNA gene, partial sequence blastn 62871 800 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium palustre
11096285 11096285 PRJNA911178_P_NODE_280269_length_243_cov_1.635294_g277795_i0 PRJNA911178 280269 243 1.635294 3.97376442 Halococcus thailandensis 335952 Archaea Archaea 159 5.66e-46   NR WP_007740653.1 335952 g277795 i0 93.7 0.975308641975309 79 5 97.5 0 242 6 84 162 WP_007740653.1 alpha-ketoacid dehydrogenase subunit beta [Halococcus thailandensis] diamond 237 159 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus thailandensis
15278204 15278204 PRJNA911178_P_NODE_275312_length_244_cov_1.456140_g272838_i0 PRJNA911178 275312 244 1.45614 3.5529816 Methanomada group 2283794 Archaea Archaea 113 9.95e-21   NTclustered gi|2891700162|gb|CP178165.1| 213231 g272838 i0 89.773 39.3688524590164 88 9 36 0 5 92 710149 710236 Methanocaldococcus indicus strain SL43 chromosome, complete genome blastn 9606 113 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus indicus
17827903 17827903 PRJNA911178_P_NODE_304654_length_227_cov_3.071429_g302180_i0 PRJNA911178 304654 227 3.071429 6.97214383 Methanobacterium 2160 Archaea Archaea 353 4.95e-93   NTclustered gi|110180147|gb|DQ649333.1| 2171 g302180 i0 96.729 112.42731277533 214 3 93 2 1 210 214 1 Methanobacterium palustre strain 21 16S ribosomal RNA gene, partial sequence blastn 25521 353 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium palustre
21294304 21294304 PRJNA911178_P_NODE_231397_length_255_cov_1.653846_g228923_i0 PRJNA911178 231397 255 1.653846 4.2173073 Halorussus gelatinilyticus 2937524 Archaea Archaea 78.7 3.82e-10   NTclustered gi|2234308622|gb|CP096658.1| 2937524 g228923 i0 88.06 0.262745098039216 67 6 26 2 177 242 2188778 2188843 Halorussus gelatinilyticus strain XZYJT40 chromosome, complete genome blastn 67 78.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus gelatinilyticus
26802837 26802837 PRJNA911178_P_NODE_271261_length_245_cov_0.895349_g268787_i0 PRJNA911178 271261 245 0.895349 2.19360505 Euryarchaeota archaeon TMED97 1986697 Archaea Archaea 42.7 0.0139   NR OUV25232.1 1986697 g268787 i0 38.3 0.73469387755102 60 35 73.5 1 223 44 15 72 OUV25232.1 MAG: hypothetical protein CBC57_05760 [Euryarchaeota archaeon TMED97] diamond 180 42.7 1 Archaea   Methanobacteriati Methanobacteriota         Euryarchaeota archaeon TMED97
27150455 27150455 PRJNA911178_P_NODE_171702_length_288_cov_1.274419_g169229_i0 PRJNA911178 171702 288 1.274419 3.67032672 Halococcus sp. PRR34 3020830 Archaea Archaea 135 2.37e-34   NR WP_273837522.1 3020830 g169229 i0 64.9 0.979166666666667 94 33 97.9 0 282 1 36 129 WP_273837522.1 hypothetical protein [Halococcus sp. PRR34] diamond 282 135 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sp. PRR34
28263469 28263469 PRJNA911178_P_NODE_212426_length_265_cov_1.380208_g209952_i0 PRJNA911178 212426 265 1.380208 3.6575512 Halobacteriales 2235 Archaea Archaea 55.1 2.04e-6   NR WP_227230619.1 1126234 g209952 i0 67.5 2.12830188679245 40 13 45.3 0 10 129 294 333 WP_227230619.1 universal stress protein [Salinirubrum litoreum] diamond 564 55.5 0.992792792792793 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinirubrum Salinirubrum litoreum
28579512 28579512 PRJNA911178_P_NODE_211467_length_265_cov_2.317708_g208993_i0 PRJNA911178 211467 265 2.317708 6.1419262 root 1 Root_unresolved Root_unresolved 172 5.919999999999999e-53   NR WP_167895546.1 1638261 g208993 i0 98.9 1.96981132075472 87 1 98.5 0 261 1 68 154 WP_167895546.1 pyridoxamine 5'-phosphate oxidase, partial [Thermococcus sp. M36] diamond 522 172 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. M36
29014353 29014353 PRJNA911178_P_NODE_261468_length_247_cov_0.885057_g258994_i0 PRJNA911178 261468 247 0.885057 2.18609079 Halonotius aquaticus 2216978 Archaea Archaea 156 8.34e-45   NR WP_120102540.1 2216978 g258994 i0 96.2 0.959514170040486 79 3 96 0 3 239 159 237 WP_120102540.1 C-terminal binding protein [Halonotius aquaticus] diamond 237 156 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius aquaticus
29235095 29235095 PRJNA911178_P_NODE_206549_length_268_cov_1.543590_g204075_i0 PRJNA911178 206549 268 1.54359 4.1368212 Haladaptatus sp. T7 2029368 Archaea Archaea 44.7 0.0098   NR WP_264783034.1 2029368 g204075 i0 42.4 0.66044776119403 59 31 62.7 1 253 86 71 129 WP_264783034.1 DUF7351 domain-containing protein [Haladaptatus sp. T7] diamond 177 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus sp. T7
30656369 30656369 PRJNA911178_P_NODE_289693_length_242_cov_0.875740_g287219_i0 PRJNA911178 289693 242 0.87574 2.1192908 Haloglomus sp. 2806254 Archaea Archaea 45.4 0.00368   NR MFB6207698.1 2806254 g287219 i0 48 0.619834710743802 50 25 60.7 1 8 154 193 242 MFB6207698.1 methionyl-tRNA formyltransferase [Haloglomus sp.] diamond 150 45.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Haloglomus Haloglomus sp.
31035864 31035864 PRJNA911178_P_NODE_270835_length_245_cov_0.895349_g268361_i0 PRJNA911178 270835 245 0.895349 2.19360505 Natronomonas sp. 2184060 Archaea Archaea 42.4 0.048   NR WP_310675245.1 2184060 g268361 i0 39.7 0.710204081632653 58 32 71 1 72 245 181 235 WP_310675245.1 phosphonate ABC transporter ATP-binding protein [Natronomonas sp.] diamond 174 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp.
31422316 31422316 PRJNA911178_P_NODE_252296_length_249_cov_0.875000_g249822_i0 PRJNA911178 252296 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 101 2e-24   NR WP_227231125.1 1126234 g249822 i0 60.5 7.12048192771084 76 26 91.6 1 228 1 22 93 WP_227231125.1 hypothetical protein [Salinirubrum litoreum] diamond 1773 101 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinirubrum Salinirubrum litoreum
31864936 31864936 PRJNA911178_P_NODE_259597_length_247_cov_1.580460_g257123_i0 PRJNA911178 259597 247 1.58046 3.9037362 root 1 Root_unresolved Root_unresolved 118 2.24e-32   NR WP_167895648.1 1638261 g257123 i0 100 1.4331983805668 59 0 71.7 0 67 243 1 59 WP_167895648.1 hypothetical protein, partial [Thermococcus sp. M36] diamond 354 118 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. M36

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;