RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA911178" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA911178 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8902933 8902933 PRJNA911178_P_NODE_227467_length_257_cov_1.635870_g224993_i0 PRJNA911178 227467 257 1.63587 4.2041859 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 122 3.53e-30   NR ETO24530.1 46433 g224993 i0 69.5 2.83657587548638 82 25 95.7 0 8 253 285 366 ETO24530.1 protein kinase, cAMP-dependent, catalytic chain [Reticulomyxa filosa] diamond 729 122 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
26739108 26739108 PRJNA911178_P_NODE_119481_length_335_cov_2.706107_g117009_i0 PRJNA911178 119481 335 2.706107 9.06545845 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 106 7.6e-26   NR ETO05200.1 46433 g117009 i0 51.6 0.814925373134328 91 41 79.7 2 64 330 16 105 ETO05200.1 hypothetical protein RFI_32196 [Reticulomyxa filosa] diamond 273 106 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27688333 27688333 PRJNA911178_P_NODE_291224_length_241_cov_1.589286_g288750_i0 PRJNA911178 291224 241 1.589286 3.83017926 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.23e-6   NR ETO23063.1 46433 g288750 i0 37.9 0.821576763485477 66 41 82.2 0 223 26 591 656 ETO23063.1 hypothetical protein RFI_14122, partial [Reticulomyxa filosa] diamond 198 55.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28540673 28540673 PRJNA911178_P_NODE_95667_length_368_cov_1.508475_g93197_i0 PRJNA911178 95667 368 1.508475 5.551188 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 158 5.529999999999998e-42   NR ETO10976.1 46433 g93197 i0 62 4.9320652173913 121 46 98.6 0 365 3 261 381 ETO10976.1 hypothetical protein RFI_26400 [Reticulomyxa filosa] diamond 1815 158 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29266439 29266439 PRJNA911178_P_NODE_288229_length_242_cov_0.911243_g285755_i0 PRJNA911178 288229 242 0.911243 2.20520806 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 102 3.049999999999999e-23   NR ETO30355.1 46433 g285755 i0 57.1 1.90909090909091 77 33 95.5 0 234 4 255 331 ETO30355.1 hypothetical protein RFI_06765, partial [Reticulomyxa filosa] diamond 462 102 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29581978 29581978 PRJNA911178_P_NODE_126730_length_327_cov_1.763780_g124258_i0 PRJNA911178 126730 327 1.76378 5.7675606 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 96.3 1.28e-21   NR ETO31397.1 46433 g124258 i0 49.5 4.88990825688073 107 50 97.2 2 320 3 58 161 ETO31397.1 hypothetical protein RFI_05723 [Reticulomyxa filosa] diamond 1599 96.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31952580 31952580 PRJNA911178_P_NODE_243817_length_250_cov_2.299435_g241343_i0 PRJNA911178 243817 250 2.299435 5.7485875 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 50.1 1.09e-4   NR ETO10269.1 46433 g241343 i0 44.3 0.948 79 40 90 2 25 249 553 631 ETO10269.1 hypothetical protein RFI_27108 [Reticulomyxa filosa] diamond 237 50.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31952585 31952585 PRJNA911178_P_NODE_252977_length_249_cov_0.875000_g250503_i0 PRJNA911178 252977 249 0.875 2.17875 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 115 1.57e-28   NR ETO29591.1 46433 g250503 i0 72.5 0.963855421686747 80 21 96.4 1 240 1 260 338 ETO29591.1 mitochondrial phosphate carrier protein [Reticulomyxa filosa] diamond 240 115 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32213316 32213316 PRJNA911178_P_NODE_59178_length_454_cov_1.524934_g56732_i0 PRJNA911178 59178 454 1.524934 6.92320036 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 109 5.55e-26   NR ETO09495.1 46433 g56732 i0 40.6 1.91629955947137 143 85 94.5 0 434 6 122 264 ETO09495.1 hypothetical protein RFI_27881 [Reticulomyxa filosa] diamond 870 110 0.990909090909091 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;