RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA911178", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 5 ✖

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA911178 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12371504 12371504 PRJNA911178_P_NODE_241370_length_251_cov_0.865169_g238896_i0 PRJNA911178 241370 251 0.865169 2.17157419 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.8 0.023   NTclustered gi|2794873262|ref|XM_067919119.1| 135588 g238896 i0 100 0.111553784860558 28 0 11 0 11 38 699 672 Histomonas meleagridis Collagen alpha-2(IV) chain (GO595_005833), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
26644390 26644390 PRJNA911178_P_NODE_260321_length_247_cov_1.097701_g257847_i0 PRJNA911178 260321 247 1.097701 2.71132147 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 76.3 6.05e-14   NR XP_001581207.1 412133 g257847 i0 68.9 2.35627530364372 45 14 54.7 0 104 238 171 215 XP_001581207.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 582 76.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26810369 26810369 PRJNA911178_P_NODE_273161_length_245_cov_0.895349_g270687_i0 PRJNA911178 273161 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82.4 3.53e-17   NR AAC33581.1 5722 g270687 i0 57.1 15.6244897959184 70 30 85.7 0 222 13 13 82 AAC33581.1 endoplasmic reticulum heat shock protein 70, partial [Trichomonas vaginalis] diamond 3828 82.8 0.995169082125604 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28729919 28729919 PRJNA911178_P_NODE_298047_length_237_cov_2.219512_g295573_i0 PRJNA911178 298047 237 2.219512 5.26024344 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 60.5 1.95e-8   NR KAH0786112.1 135588 g295573 i0 48.9 0.594936708860759 47 24 59.5 0 7 147 149 195 KAH0786112.1 radial spoke head protein 4 A [Histomonas meleagridis] diamond 141 60.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32648020 32648020 PRJNA911178_P_NODE_273000_length_245_cov_0.895349_g270526_i0 PRJNA911178 273000 245 0.895349 2.19360505 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 66.2 7.9e-11   NR EAX82254.1 412133 g270526 i0 77.8 1.32244897959184 36 8 44.1 0 5 112 203 238 EAX82254.1 actin, partial [Trichomonas vaginalis G3] diamond 324 66.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;