RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA911178", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJNA911178 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13646927 13646927 PRJNA911178_P_NODE_57791_length_459_cov_1.186528_g55349_i0 PRJNA911178 57791 459 1.186528 5.44616352 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 2.03e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g55349 i0 92.537 15.2091503267974 67 5 15 0 290 356 4253 4319 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6981 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
14920110 14920110 PRJNA911178_P_NODE_205872_length_268_cov_2.358974_g203398_i0 PRJNA911178 205872 268 2.358974 6.32205032 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 148 3.0399999999999996e-31   NTclustered gi|300078503|gb|GU001165.1| 238746 g203398 i0 93.878 38.8432835820896 98 6 37 0 3 100 3045 2948 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10410 148 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
25119075 25119075 PRJNA911178_P_NODE_308040_length_206_cov_26.909774_g305566_i0 PRJNA911178 308040 206 26.909774 55.43413444 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 276 9.82e-70   NTclustered gi|1200177725|gb|MF039359.1| 190325 g305566 i0 91.176 98.7669902912621 204 16 99 2 1 203 6137 5935 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20346 276 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;