RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA909412" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26873953 26873953 PRJNA909412_P_NODE_4321_length_252_cov_2.122066_g4180_i0 PRJNA909412 4321 252 2.122066 5.34760632 Thermodesulfobacteriota 200940 Bacteria Bacteria 82.8 3.38e-16   NR WP_214296193.1 44671 g4180 i0 57.1 10.702380952381 70 28 83.3 1 43 252 499 566 WP_214296193.1 5-histidylcysteine sulfoxide synthase [Pelotalea chapellei] diamond 2697 83.6 0.990430622009569 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Pelotalea Pelotalea chapellei
27751242 27751242 PRJNA909412_P_NODE_11344_length_170_cov_1.687023_g11203_i0 PRJNA909412 11344 170 1.687023 2.8679391 Desulfobacterales bacterium 2044940 Bacteria Bacteria 73.2 2.51e-13   NR MBF0121621.1 2044940 g11203 i0 60 1.94117647058824 55 22 97.1 0 168 4 210 264 MBF0121621.1 insulinase family protein [Desulfobacterales bacterium] diamond 330 73.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32371558 32371558 PRJNA909412_P_NODE_5039_length_232_cov_3.227979_g4898_i0 PRJNA909412 5039 232 3.227979 7.48891128 root 1 Root_unresolved Root_unresolved 77.4 1.46e-15   NR MBP7518085.1 895 g4898 i0 77.1 12.4008620689655 48 11 62.1 0 232 89 129 176 MBP7518085.1 chorismate synthase [Desulfobulbus sp.] diamond 2877 77.8 0.994858611825193 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;