RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA909412" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA909412 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10177809 10177809 PRJNA909412_P_NODE_17628_length_150_cov_2.261261_g17487_i0 PRJNA909412 17628 150 2.261261 3.3918915 Asterias rubens 7604 Echinodermata other_Eukaryota 88.6 2.19e-19   NR XP_033630154.1 7604 g17487 i0 79.6 4.86 49 10 98 0 3 149 121 169 XP_033630154.1 40S ribosomal protein SA-like [Asterias rubens] diamond 729 88.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
21292602 21292602 PRJNA909412_P_NODE_2537_length_334_cov_3.545763_g2397_i0 PRJNA909412 2537 334 3.545763 11.84284842 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.031   NTclustered gi|1752385824|ref|XM_030995845.1| 7668 g2397 i0 96.774 0.18562874251497 31 1 9 0 7 37 2008 2038 PREDICTED: Strongylocentrotus purpuratus KICSTOR complex protein SZT2-like (LOC115928544), mRNA blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26771232 26771232 PRJNA909412_P_NODE_7681_length_191_cov_1.947368_g7540_i0 PRJNA909412 7681 191 1.947368 3.71947288 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 57.4 1.28e-7   NR KAJ8019865.1 206669 g7540 i0 37.3 0.926701570680628 59 37 92.7 0 179 3 1228 1286 KAJ8019865.1 A disintegrin and metalloproteinase with thrombospondin motifs 9 [Holothuria leucospilota] diamond 177 57.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
27157999 27157999 PRJNA909412_P_NODE_5182_length_229_cov_2.557895_g5041_i0 PRJNA909412 5182 229 2.557895 5.85757955 Metazoa 33208 Echinodermata other_Eukaryota 112 1.35e-27   NR XP_033624965.1 7604 g5041 i0 64.5 3.9825327510917 76 27 99.6 0 2 229 185 260 XP_033624965.1 alternative oxidase, mitochondrial-like isoform X2 [Asterias rubens] diamond 912 112 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
28610995 28610995 PRJNA909412_P_NODE_787_length_634_cov_4.468908_g677_i0 PRJNA909412 787 634 4.468908 28.33287672 Metazoa 33208 Echinodermata other_Eukaryota 194 2.03e-54   NR XP_071481459.1 105358 g677 i0 47.9 13.1214511041009 213 108 99.8 2 2 634 402 613 XP_071481459.1 glycine--tRNA ligase-like [Diadema antillarum] diamond 8319 195 0.994871794871795 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
28919074 28919074 PRJNA909412_P_NODE_7948_length_188_cov_2.751678_g7807_i0 PRJNA909412 7948 188 2.751678 5.17315464 Acanthaster planci 133434 Echinodermata other_Eukaryota 42.7 0.0184   NR XP_022087387.1 133434 g7807 i0 31 0.925531914893617 58 39 91 1 2 172 349 406 XP_022087387.1 uncharacterized protein LOC110977496 isoform X1 [Acanthaster planci] diamond 174 42.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
30000428 30000428 PRJNA909412_P_NODE_6311_length_209_cov_0.935294_g6170_i0 PRJNA909412 6311 209 0.935294 1.95476446 Metazoa 33208 Echinodermata other_Eukaryota 52.8 6.62e-6   NR XP_041471790.1 7654 g6170 i0 55.8 6.78947368421053 43 19 61.7 0 4 132 224 266 XP_041471790.1 uncharacterized protein LOC121421194 [Lytechinus variegatus] diamond 1419 53.1 0.994350282485876 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
31731044 31731044 PRJNA909412_P_NODE_5597_length_220_cov_3.558011_g5456_i0 PRJNA909412 5597 220 3.558011 7.8276242 Diadema antillarum 105358 Echinodermata other_Eukaryota 99.4 4.929999999999999e-23   NR XP_071491044.1 105358 g5456 i0 69.9 5.95909090909091 73 21 99.5 1 2 220 135 206 XP_071491044.1 retinol dehydrogenase 11-like [Diadema antillarum] diamond 1311 99.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
32308420 32308420 PRJNA909412_P_NODE_4999_length_233_cov_2.458763_g4858_i0 PRJNA909412 4999 233 2.458763 5.72891779 root 1 Root_unresolved Root_unresolved 55.1 1.49e-6   NR XP_033636774.1 7604 g4858 i0 35.3 4.6480686695279 68 43 86.3 1 201 1 574 641 XP_033636774.1 nardilysin-like [Asterias rubens] diamond 1083 55.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;