RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA909412", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA909412 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441516 3441516 PRJNA909412_P_NODE_4303_length_253_cov_1.350467_g4162_i0 PRJNA909412 4303 253 1.350467 3.41668151 Blastocladiomycota 451459 Fungi Fungi 142 3.81e-42   NR ORZ31460.1 765915 g4162 i0 84.3 11.8102766798419 83 13 98.4 0 3 251 4 86 ORZ31460.1 putative RPL43B-60S large subunit ribosomal protein [Catenaria anguillulae PL171] diamond 2988 142 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
22567821 22567821 PRJNA909412_P_NODE_3678_length_274_cov_2.017021_g3537_i0 PRJNA909412 3678 274 2.017021 5.52663754 Eukaryota 2759 Fungi Fungi 133 2.06e-34   NR KAI9216219.1 64508 g3537 i0 65.9 52.8065693430657 91 31 99.6 0 273 1 323 413 KAI9216219.1 hypothetical protein BC828DRAFT_393982 [Blastocladiella britannica] diamond 14469 134 0.992537313432836 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
27782723 27782723 PRJNA909412_P_NODE_16564_length_152_cov_1.247788_g16423_i0 PRJNA909412 16564 152 1.247788 1.89663776 Catenaria anguillulae PL171 765915 Fungi Fungi 59.7 6.5e-9   NR ORZ36521.1 765915 g16423 i0 58 0.986842105263158 50 21 98.7 0 151 2 74 123 ORZ36521.1 thioredoxin-like protein [Catenaria anguillulae PL171] diamond 150 59.7 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
32213294 32213294 PRJNA909412_P_NODE_2198_length_360_cov_3.199377_g2058_i0 PRJNA909412 2198 360 3.199377 11.5177572 Fungi 4751 Fungi Fungi 97.1 4.429999999999999e-23   NR KAI9222453.1 64508 g2058 i0 49.1 4.46666666666667 106 54 88.3 0 2 319 12 117 KAI9222453.1 ribosomal protein L14-domain-containing protein [Blastocladiella britannica] diamond 1608 97.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;