RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA909412", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA909412 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16551678 16551678 PRJNA909412_P_NODE_15833_length_153_cov_1.991228_g15692_i0 PRJNA909412 15833 153 1.991228 3.04657884 Candidatus Phytoplasma 33926 Bacteria Bacteria 54.7 0.003   NTclustered gi|1907667492|gb|CP040925.1| 1123738 g15692 i0 100 1.13725490196078 29 0 19 0 6 34 216119 216147 Candidatus Phytoplasma australasiaticum subsp. taiwanense strain NCHU2014 chromosome, complete genome blastn 174 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
30719497 30719497 PRJNA909412_P_NODE_2474_length_338_cov_3.327759_g2334_i0 PRJNA909412 2474 338 3.327759 11.24782542 Mesomycoplasma hyopneumoniae 2099 Bacteria Bacteria 58.5 3.08e-7   NR WP_011205892.1 2099 g2334 i0 41.8 2.42307692307692 91 45 80.8 2 64 336 1 83 WP_011205892.1 F0F1 ATP synthase subunit alpha [Mesomycoplasma hyopneumoniae] diamond 819 58.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyopneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;