RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA909412", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441481 3441481 PRJNA909412_P_NODE_1683_length_422_cov_2.678851_g1543_i0 PRJNA909412 1683 422 2.678851 11.30475122 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 169 6.31e-47   NR ETO21496.1 46433 g1543 i0 66.4 2.45260663507109 116 37 81 1 420 79 273 388 ETO21496.1 hypothetical protein RFI_15702 [Reticulomyxa filosa] diamond 1035 170 0.994117647058824 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27118991 27118991 PRJNA909412_P_NODE_7002_length_199_cov_2.425000_g6861_i0 PRJNA909412 7002 199 2.425 4.82575 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00596   NR ETO26164.1 46433 g6861 i0 38.3 0.904522613065327 60 35 87.4 2 194 21 1073 1132 ETO26164.1 ubiquitin protein ligase [Reticulomyxa filosa] diamond 180 44.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29620865 29620865 PRJNA909412_P_NODE_10770_length_172_cov_2.684211_g10629_i0 PRJNA909412 10770 172 2.684211 4.61684292 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00212   NR ETO21079.1 46433 g10629 i0 76 5.23255813953488 25 6 43.6 0 167 93 151 175 ETO21079.1 hypothetical protein RFI_16125 [Reticulomyxa filosa] diamond 900 45.4 0.993392070484582 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;