RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA909412", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 20 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 20 ✖

bioproject 1

  • PRJNA909412 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1249253 1249253 PRJNA909412_P_NODE_5301_length_226_cov_2.973262_g5160_i0 PRJNA909412 5301 226 2.973262 6.71957212 root 1 Root_unresolved Root_unresolved 102 9.029999999999999e-24   NR TMS40035.1 34508 g5160 i0 61 15.6371681415929 77 26 96.9 1 221 3 272 348 TMS40035.1 hypothetical protein L596_006471 [Steinernema carpocapsae] diamond 3534 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
18742215 18742215 PRJNA909412_P_NODE_2495_length_337_cov_1.932886_g2355_i0 PRJNA909412 2495 337 1.932886 6.51382582 Bursaphelenchus cocophilus 269710 Nematoda Nematoda 168 2.03e-50   NR AAS90523.1 269710 g2355 i0 75.2 12.0712166172107 113 27 99.7 1 337 2 52 164 AAS90523.1 cytochrome oxidase subunit I, partial [Bursaphelenchus cocophilus] diamond 4068 168 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus cocophilus
19100678 19100678 PRJNA909412_P_NODE_10395_length_172_cov_2.947368_g10254_i0 PRJNA909412 10395 172 2.947368 5.06947296 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.014   NTclustered gi|1158594002|ref|XM_003141095.2| 7209 g10254 i0 100 2.76744186046512 28 0 16 0 1 28 2602 2575 Loa loa hypothetical protein mRNA blastn 476 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
19100703 19100703 PRJNA909412_P_NODE_435_length_856_cov_25.199510_g358_i0 PRJNA909412 435 856 25.19951 215.7078056 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 306 1.0299999999999998e-101   NR XP_003139952.1 7209 g358 i0 68.8 36.5852803738318 208 65 72.9 0 24 647 1 208 XP_003139952.1 50S ribosomal protein L16 [Loa loa] diamond 31317 308 0.993506493506494 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
27656469 27656469 PRJNA909412_P_NODE_2684_length_324_cov_3.143860_g2544_i0 PRJNA909412 2684 324 3.14386 10.1861064 Ancylostoma ceylanicum 53326 Nematoda Nematoda 51.6 7.07e-5   NR EYC17883.1 53326 g2544 i0 34.5 8.81481481481481 119 58 91.7 4 305 9 250 368 EYC17883.1 hypothetical protein Y032_0029g1934 [Ancylostoma ceylanicum] diamond 2856 51.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
28477248 28477248 PRJNA909412_P_NODE_1586_length_438_cov_5.679198_g1446_i0 PRJNA909412 1586 438 5.679198 24.87488724 Meloidogyne graminicola 189291 Nematoda Nematoda 50.4 4.5e-4   NR AVZ46778.1 189291 g1446 i0 34.8 0.63013698630137 92 60 63 0 2 277 155 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 276 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
28705803 28705803 PRJNA909412_P_NODE_927_length_584_cov_12.110092_g682_i1 PRJNA909412 927 584 12.110092 70.72293728 Onchocercidae 6296 Nematoda Nematoda 132 1.17e-33   NR VDN90364.1 6280 g682 i1 54.2 5.13184931506849 118 53 60.6 1 529 176 29 145 VDN90364.1 unnamed protein product [Brugia pahangi] diamond 2997 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
28729869 28729869 PRJNA909412_P_NODE_11367_length_170_cov_1.259542_g11226_i0 PRJNA909412 11367 170 1.259542 2.1412214 Trichuris suis 68888 Nematoda Nematoda 54.7 8.13e-7   NR KFD63582.1 68888 g11226 i0 50 3.81176470588235 54 26 95.3 1 6 167 90 142 KFD63582.1 hypothetical protein M514_24208, partial [Trichuris suis] diamond 648 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29045677 29045677 PRJNA909412_P_NODE_3048_length_302_cov_2.273764_g2908_i0 PRJNA909412 3048 302 2.273764 6.86676728 Strongyloides ratti 34506 Nematoda Nematoda 60.8 3.22e-8   NR XP_024509038.1 34506 g2908 i0 41.2 1.01324503311258 102 50 93.4 3 283 2 245 344 XP_024509038.1 Polyadenylate-binding protein 4 [Strongyloides ratti] diamond 306 60.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29203622 29203622 PRJNA909412_P_NODE_8629_length_181_cov_2.936620_g8488_i0 PRJNA909412 8629 181 2.93662 5.3152822 Anisakis simplex 6269 Nematoda Nematoda 46.2 9.48e-4   NR VDK42393.1 6269 g8488 i0 47.8 0.76243093922651906 46 24 76.2 0 167 30 202 247 VDK42393.1 unnamed protein product [Anisakis simplex] diamond 138 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
29298171 29298171 PRJNA909412_P_NODE_169_length_1239_cov_5.511667_g136_i0 PRJNA909412 169 1239 5.511667 68.28955413 Meloidogyne graminicola 189291 Nematoda Nematoda 112 3.2099999999999994e-24   NR AVZ46778.1 189291 g136 i0 51.5 0.314769975786925 130 62 31.2 1 895 509 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 112 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
29298176 29298176 PRJNA909412_P_NODE_8069_length_187_cov_2.067568_g7928_i0 PRJNA909412 8069 187 2.067568 3.86635216 Pristionchus fissidentatus 1538716 Nematoda Nematoda 62.8 6.45e-11   NR GMT14341.1 1538716 g7928 i0 65.2 0.737967914438503 46 16 73.8 0 17 154 53 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 138 62.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
29463071 29463071 PRJNA909412_P_NODE_10670_length_172_cov_2.766917_g10529_i0 PRJNA909412 10670 172 2.766917 4.75909724 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.8 1.91e-5   NR MFH4982612.1 75299 g10529 i0 47.5 11.0058139534884 61 27 97.7 2 170 3 120 180 MFH4982612.1 hypothetical protein [Gnathostoma spinigerum] diamond 1893 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
29463072 29463072 PRJNA909412_P_NODE_11410_length_169_cov_2.353846_g11269_i0 PRJNA909412 11410 169 2.353846 3.97799974 Opisthokonta 33154 Nematoda Nematoda 82.8 6.79e-17   NR VDO78081.1 6339 g11269 i0 78.4 25.508875739645 51 11 90.5 0 164 12 235 285 VDO78081.1 unnamed protein product, partial [Heligmosomoides polygyrus] diamond 4311 82.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
30024637 30024637 PRJNA909412_P_NODE_5191_length_229_cov_2.147368_g5050_i0 PRJNA909412 5191 229 2.147368 4.91747272 Heterodera trifolii 157864 Nematoda Nematoda 62.8 2.22e-9   NR KAL3073343.1 157864 g5050 i0 47.7 0.851528384279476 65 34 85.2 0 225 31 202 266 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 195 62.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
30285047 30285047 PRJNA909412_P_NODE_792_length_630_cov_9.945854_g682_i0 PRJNA909412 792 630 9.945854 62.6588802 Onchocercidae 6296 Nematoda Nematoda 132 1.92e-33   NR VDN90364.1 6280 g682 i0 54.2 4.75714285714286 118 53 56.2 1 575 222 29 145 VDN90364.1 unnamed protein product [Brugia pahangi] diamond 2997 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
30972420 30972420 PRJNA909412_P_NODE_2754_length_318_cov_2.336918_g2614_i0 PRJNA909412 2754 318 2.336918 7.43139924 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 118 1.72e-30   NR KAI6182696.1 293665 g2614 i0 61.7 4.42452830188679 94 36 88.7 0 283 2 15 108 KAI6182696.1 Ribosomal protein L1 domain containing protein [Aphelenchoides bicaudatus] diamond 1407 118 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
31200490 31200490 PRJNA909412_P_NODE_15875_length_153_cov_1.903509_g15734_i0 PRJNA909412 15875 153 1.903509 2.91236877 Metazoa 33208 Nematoda Nematoda 42.7 0.0109   NR KAI6200431.1 269767 g15734 i0 44.2 5.52941176470588 43 21 84.3 1 17 145 3087 3126 KAI6200431.1 hypothetical protein M3Y96_00732900 [Aphelenchoides besseyi] diamond 846 43.1 0.990719257540603 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31825892 31825892 PRJNA909412_P_NODE_8577_length_182_cov_1.706294_g8436_i0 PRJNA909412 8577 182 1.706294 3.10545508 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 72.4 4.3e-13   NR CAD5207346.1 465554 g8436 i0 54.4 3.77472527472527 57 26 94 0 2 172 180 236 CAD5207346.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 687 72.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
32395672 32395672 PRJNA909412_P_NODE_7699_length_191_cov_1.625000_g7558_i0 PRJNA909412 7699 191 1.625 3.10375 Trichuris suis 68888 Nematoda Nematoda 52.4 7.31e-6   NR KHJ43897.1 68888 g7558 i0 64.7 1.6020942408377 34 12 53.4 0 102 1 22 55 KHJ43897.1 DEAD/DEAH box helicase [Trichuris suis] diamond 306 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;