RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where bioproject = "PRJNA909412", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 21 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 21 ✖

bioproject 1

  • PRJNA909412 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
890662 890662 PRJNA909412_P_NODE_1821_length_403_cov_4.659341_g1681_i0 PRJNA909412 1821 403 4.659341 18.77714423 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 233 5.31e-71   NR XP_050402887.1 6465 g1681 i0 79.9 59.8287841191067 134 27 99.8 0 403 2 243 376 XP_050402887.1 lysine--tRNA ligase [Patella vulgata] diamond 24111 235 0.991489361702128 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
890698 890698 PRJNA909412_P_NODE_8301_length_184_cov_4.420690_g8160_i0 PRJNA909412 8301 184 4.42069 8.1340696 Lottia gigantea 225164 Mollusca Mollusca 52.8 0.016   NTclustered gi|676459712|ref|XM_009057142.1| 225164 g8160 i0 100 0.152173913043478 28 0 15 0 110 137 1442 1469 Lottia gigantea hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea
3441524 3441524 PRJNA909412_P_NODE_6763_length_202_cov_2.791411_g6622_i0 PRJNA909412 6763 202 2.791411 5.63865022 Opisthokonta 33154 Mollusca Mollusca 107 3.85e-25   NR XP_064599602.1 13599 g6622 i0 75 5.79207920792079 64 16 95 0 3 194 293 356 XP_064599602.1 LOW QUALITY PROTEIN: probable methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial [Liolophura japonica] diamond 1170 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
4719240 4719240 PRJNA909412_P_NODE_7104_length_198_cov_2.088050_g6963_i0 PRJNA909412 7104 198 2.08805 4.134339 Mya arenaria 6604 Mollusca Mollusca 73.1 1.32e-8   NTclustered gi|2427374800|ref|XM_052912934.1| 6604 g6963 i0 80.198 0.51010101010101 101 16 50 3 100 198 1229 1131 PREDICTED: Mya arenaria 26S proteasome regulatory subunit 10B (LOC128209087), mRNA blastn 101 73.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
11094313 11094313 PRJNA909412_P_NODE_8989_length_178_cov_2.388489_g8848_i0 PRJNA909412 8989 178 2.388489 4.25151042 Aplysia californica 6500 Mollusca Mollusca 52.8 0.015   NTclustered gi|1897911960|ref|XR_004858657.1| 6500 g8848 i0 96.875 0.179775280898876 32 0 18 1 16 47 139 169 PREDICTED: Aplysia californica uncharacterized LOC118477858 (LOC118477858), ncRNA blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
16193480 16193480 PRJNA909412_P_NODE_3313_length_289_cov_1.584000_g3172_i0 PRJNA909412 3313 289 1.584 4.57776 Dreissena polymorpha 45954 Mollusca Mollusca 52.8 0.027   NTclustered gi|2364551139|ref|XM_052377903.1| 45954 g3172 i0 100 0.0968858131487889 28 0 10 0 203 230 6312 6339 PREDICTED: Dreissena polymorpha alpha-protein kinase vwkA-like (LOC127846549), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
18742221 18742221 PRJNA909412_P_NODE_3095_length_299_cov_15.069231_g2955_i0 PRJNA909412 3095 299 15.069231 45.05700069 Ctena cf. galapagana NHMUK 20210086 2892552 Mollusca Mollusca 134 9.65e-27   NTclustered gi|2129023951|gb|OL361786.1| 2892552 g2955 i0 90.909 7.54849498327759 99 9 33 0 196 294 4050 4148 Ctena cf. galapagana NHMUK 20210086 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2257 134 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Lucinida Lucinidae Ctena Ctena cf. galapagana NHMUK 20210086
20017280 20017280 PRJNA909412_P_NODE_6636_length_204_cov_1.878788_g6495_i0 PRJNA909412 6636 204 1.878788 3.83272752 Octopus bimaculoides 37653 Mollusca Mollusca 54.7 0.005   NTclustered gi|2427293685|ref|XM_014932038.2| 37653 g6495 i0 96.97 2.65686274509804 33 0 16 1 7 39 1776 1807 PREDICTED: Octopus bimaculoides probable serine/threonine-protein kinase DDB_G0267686 (LOC106881582), transcript variant X2, mRNA blastn 542 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
20375499 20375499 PRJNA909412_P_NODE_10976_length_172_cov_2.421053_g10835_i0 PRJNA909412 10976 172 2.421053 4.16421116 Magallana 147004 Mollusca Mollusca 60.2 8.62e-5   NTclustered gi|2751282572|ref|XM_066086753.1| 29159 g10835 i0 80.769 0.906976744186046 78 13 45 2 4 80 545 469 PREDICTED: Magallana gigas ras-related protein Rab-13 (LOC105324949), mRNA blastn 156 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
21651406 21651406 PRJNA909412_P_NODE_3877_length_267_cov_2.166667_g3736_i0 PRJNA909412 3877 267 2.166667 5.78500089 Metazoa 33208 Mollusca Mollusca 56.5 0.002   NTclustered gi|2694097628|ref|XM_063586004.1| 6551 g3736 i0 100 1.43071161048689 30 0 11 0 24 53 483 512 PREDICTED: Mytilus trossulus uncharacterized LOC134722385 (LOC134722385), mRNA blastn 382 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus
27663882 27663882 PRJNA909412_P_NODE_6684_length_203_cov_3.414634_g6543_i0 PRJNA909412 6684 203 3.414634 6.93170702 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 5.21e-4   NR XP_021358087.1 6573 g6543 i0 37.7 4.59605911330049 61 33 82.8 1 28 195 502 562 XP_021358087.1 uncharacterized protein LOC110453459 [Mizuhopecten yessoensis] diamond 933 47.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
28003818 28003818 PRJNA909412_P_NODE_16065_length_152_cov_2.876106_g15924_i0 PRJNA909412 16065 152 2.876106 4.37168112 Plakobranchus ocellatus 259542 Mollusca Mollusca 49.7 8.36e-6   NR GFN74362.1 259542 g15924 i0 66.7 3.375 27 9 53.3 0 152 72 70 96 GFN74362.1 pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 [Plakobranchus ocellatus] diamond 513 49.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Plakobranchus Plakobranchus ocellatus
28508846 28508846 PRJNA909412_P_NODE_2147_length_366_cov_1.752294_g2007_i0 PRJNA909412 2147 366 1.752294 6.41339604 Elysia marginata 1093978 Mollusca Mollusca 107 7.23e-28   NR GFS19501.1 1093978 g2007 i0 77.8 3.09836065573771 54 12 44.3 0 347 186 1 54 GFS19501.1 40S ribosomal protein S29 [Elysia marginata] diamond 1134 107 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Elysia Elysia marginata
29179452 29179452 PRJNA909412_P_NODE_12929_length_161_cov_2.647541_g12788_i0 PRJNA909412 12929 161 2.647541 4.26254101 Metazoa 33208 Mollusca Mollusca 47.8 1.67e-4   NR CAL1535961.1 6523 g12788 i0 32.5 5.94409937888199 80 27 98.8 1 2 160 83 162 CAL1535961.1 unnamed protein product [Lymnaea stagnalis] diamond 957 47.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
30213873 30213873 PRJNA909412_P_NODE_15432_length_154_cov_1.826087_g15291_i0 PRJNA909412 15432 154 1.826087 2.81217398 Acanthosepion pharaonis 158019 Mollusca Mollusca 76.6 8.4e-15   NR CAE1233604.1 158019 g15291 i0 70.6 0.993506493506494 51 15 99.4 0 2 154 140 190 CAE1233604.1 AGPAT3_4 [Acanthosepion pharaonis] diamond 153 76.6 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Sepiida Sepiidae Acanthosepion Acanthosepion pharaonis
31067296 31067296 PRJNA909412_P_NODE_1795_length_407_cov_3.809783_g1655_i0 PRJNA909412 1795 407 3.809783 15.50581681 Ylistrum balloti 509963 Mollusca Mollusca 60.5 1.41e-7   NR XP_060073234.1 509963 g1655 i0 34.4 0.899262899262899 122 58 84.8 5 382 38 1 107 XP_060073234.1 cathepsin F-like [Ylistrum balloti] diamond 366 60.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Ylistrum Ylistrum balloti
31731045 31731045 PRJNA909412_P_NODE_8177_length_186_cov_1.700680_g8036_i0 PRJNA909412 8177 186 1.70068 3.1632648 Patella vulgata 6465 Mollusca Mollusca 53.5 2.77e-6   NR XP_050388560.1 6465 g8036 i0 47.8 0.741935483870968 46 24 74.2 0 186 49 578 623 XP_050388560.1 protein disulfide-isomerase A4 [Patella vulgata] diamond 138 53.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
31794201 31794201 PRJNA909412_P_NODE_2357_length_347_cov_3.646104_g2217_i0 PRJNA909412 2357 347 3.646104 12.65198088 Gigantopelta aegis 1735272 Mollusca Mollusca 70.5 4.96e-12   NR XP_041351654.1 1735272 g2217 i0 66 1.59077809798271 50 17 43.2 0 161 310 167 216 XP_041351654.1 60S ribosomal protein L10a-2-like [Gigantopelta aegis] diamond 552 70.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neomphalida Peltospiridae Gigantopelta Gigantopelta aegis
32339958 32339958 PRJNA909412_P_NODE_759_length_646_cov_9.133443_g654_i0 PRJNA909412 759 646 9.133443 59.00204178 Architaenioglossa 75116 Mollusca Mollusca 116 6.01e-29   NR CAL1541088.1 6523 g654 i0 45.5 1.91331269349845 145 79 67.3 0 1 435 1 145 CAL1541088.1 unnamed protein product [Lymnaea stagnalis] diamond 1236 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
32434972 32434972 PRJNA909412_P_NODE_8999_length_178_cov_2.143885_g8858_i0 PRJNA909412 8999 178 2.143885 3.8161153 Metazoa 33208 Mollusca Mollusca 57.4 1.07e-7   NR XP_050407955.1 6465 g8858 i0 55.3 4.78651685393258 47 21 79.2 0 171 31 480 526 XP_050407955.1 cysteine--tRNA ligase, cytoplasmic [Patella vulgata] diamond 852 57.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
32585550 32585550 PRJNA909412_P_NODE_7899_length_189_cov_1.373333_g7758_i0 PRJNA909412 7899 189 1.373333 2.59559937 Batillaria attramentaria 370345 Mollusca Mollusca 97.1 3.11e-22   NR KAK7495164.1 370345 g7758 i0 73.3 1.9047619047619 60 16 95.2 0 183 4 214 273 KAK7495164.1 hypothetical protein BaRGS_00013574 [Batillaria attramentaria] diamond 360 97.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Batillariidae Batillaria Batillaria attramentaria

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;