RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA909412", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30719499 30719499 PRJNA909412_P_NODE_5614_length_220_cov_2.629834_g5473_i0 PRJNA909412 5614 220 2.629834 5.7856348 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 61.2 8.17e-9   NR XP_013757206.1 461836 g5473 i0 44.8 0.913636363636364 67 37 91.4 0 202 2 319 385 XP_013757206.1 tryptophan 2,3-dioxygenase [Thecamonas trahens ATCC 50062] diamond 201 61.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31454074 31454074 PRJNA909412_P_NODE_16336_length_152_cov_1.858407_g16195_i0 PRJNA909412 16336 152 1.858407 2.82477864 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.5 0.00578   NR XP_013760223.1 461836 g16195 i0 46.7 1.83552631578947 45 22 88.8 1 9 143 431 473 XP_013760223.1 NRF-6 protein [Thecamonas trahens ATCC 50062] diamond 279 43.9 0.990888382687927 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31825888 31825888 PRJNA909412_P_NODE_5037_length_232_cov_3.445596_g4896_i0 PRJNA909412 5037 232 3.445596 7.99378272 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 73.9 1.59e-14   NR XP_013759960.1 461836 g4896 i0 55.1 0.892241379310345 69 25 81.5 1 43 231 1 69 XP_013759960.1 40S ribosomal protein S12 [Thecamonas trahens ATCC 50062] diamond 207 73.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;