RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA909412", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA909412 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26992554 26992554 PRJNA909412_P_NODE_13602_length_160_cov_1.107438_g13461_i0 PRJNA909412 13602 160 1.107438 1.7719008 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.3 2.51e-12   NR XP_004333661.1 1257118 g13461 i0 56.6 2.98125 53 23 99.4 0 2 160 41 93 XP_004333661.1 actin bundling protein [Acanthamoeba castellanii str. Neff] diamond 477 69.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27663879 27663879 PRJNA909412_P_NODE_17544_length_150_cov_2.792793_g17403_i0 PRJNA909412 17544 150 2.792793 4.1891895 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 76.6 1.14e-14   NR XP_004335113.1 1257118 g17403 i0 77.3 6.46 44 10 88 0 14 145 457 500 XP_004335113.1 methionine-tRNA ligase [Acanthamoeba castellanii str. Neff] diamond 969 77 0.994805194805195 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28698442 28698442 PRJNA909412_P_NODE_7247_length_196_cov_2.394904_g7106_i0 PRJNA909412 7247 196 2.394904 4.69401184 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99.8 1.49e-22   NR XP_004338851.1 1257118 g7106 i0 68.8 1.91326530612245 64 20 98 0 195 4 464 527 XP_004338851.1 glucose6-phosphate dehydrogenase, C-terminal domain containing protein [Acanthamoeba castellanii str. Neff] diamond 375 99.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30782718 30782718 PRJNA909412_P_NODE_4174_length_257_cov_2.752294_g4033_i0 PRJNA909412 4174 257 2.752294 7.07339558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67 9.48e-11   NR XP_004356622.1 1257118 g4033 i0 62.5 0.560311284046693 48 18 56 0 144 1 57 104 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 144 67 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30972419 30972419 PRJNA909412_P_NODE_17234_length_151_cov_1.482143_g17093_i0 PRJNA909412 17234 151 1.482143 2.23803593 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 2.55e-18   NR XP_004338851.1 1257118 g17093 i0 77.6 0.973509933774834 49 11 97.4 0 1 147 324 372 XP_004338851.1 glucose6-phosphate dehydrogenase, C-terminal domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32174329 32174329 PRJNA909412_P_NODE_1718_length_417_cov_3.433862_g1578_i0 PRJNA909412 1718 417 3.433862 14.31920454 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 199 3.3899999999999995e-61   NR XP_004367664.1 1257118 g1578 i0 65 0.985611510791367 137 48 98.6 0 2 412 121 257 XP_004367664.1 phytanoylCoA dioxygenase [Acanthamoeba castellanii str. Neff] diamond 411 199 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;