RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA908278" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA908278 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12369315 12369315 PRJNA908278_P_NODE_1670_length_845_cov_10.582902_g1586_i0 PRJNA908278 1670 845 10.582902 89.4255219 Amoeba proteus 5775 Tubulinea other_Eukaryota 1098 0   NTclustered gi|844573744|gb|KP411223.1| 5775 g1586 i0 91.326 0.955029585798817 807 65 95 3 1 803 826 21 Amoeba proteus Tom40 mRNA, complete cds blastn 807 1098 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
14918266 14918266 PRJNA908278_P_NODE_23152_length_269_cov_2.607143_g23049_i0 PRJNA908278 23152 269 2.607143 7.01321467 Heleopera baetica 2844938 Tubulinea other_Eukaryota 102 2.41e-17   NTclustered gi|2050647004|gb|MZ366437.1| 2844938 g23049 i0 88.372 26.6208178438662 86 8 32 2 88 172 209 293 Heleopera baetica isolate A1 small subunit ribosomal RNA gene, partial sequence blastn 7161 102 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera baetica
15276956 15276956 PRJNA908278_P_NODE_15732_length_319_cov_1.113821_g15629_i0 PRJNA908278 15732 319 1.113821 3.55308899 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 348 3.4100000000000005e-91   NTclustered gi|33946358|gb|AY294158.1| 239731 g15629 i0 86.52 97.7335423197492 319 39 99 3 3 319 410 94 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 31177 348 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
22567403 22567403 PRJNA908278_P_NODE_2638_length_692_cov_1.709208_g2538_i0 PRJNA908278 2638 692 1.709208 11.82771936 Amoeba proteus 5775 Tubulinea other_Eukaryota 706 0   NTclustered gi|844573744|gb|KP411223.1| 5775 g2538 i0 85.401 0.989884393063584 685 95 99 5 10 692 869 188 Amoeba proteus Tom40 mRNA, complete cds blastn 685 706 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
23842473 23842473 PRJNA908278_P_NODE_22619_length_273_cov_1.155000_g22516_i0 PRJNA908278 22619 273 1.155 3.15315 Arcella hemisphaerica 497998 Tubulinea other_Eukaryota 226 1.4e-54   NTclustered gi|304308764|gb|HM853713.1| 497998 g22516 i0 82.156 45.4505494505495 269 43 97 5 1 266 435 169 Arcella hemisphaerica strain red clone act26 actin gene, partial cds blastn 12408 226 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
32079077 32079077 PRJNA908278_P_NODE_31038_length_246_cov_0.890173_g30935_i0 PRJNA908278 31038 246 0.890173 2.18982558 Amoeba proteus 5775 Tubulinea other_Eukaryota 120 3.04e-30   NR AAD37351.1 5775 g30935 i0 67.5 0.975609756097561 80 26 97.6 0 2 241 114 193 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 240 120 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;