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contig_metadata

14 rows where bioproject = "PRJNA908278", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 14 ✖

tax_kingdom 1

  • Pseudomonadati · 14 ✖

bioproject 1

  • PRJNA908278 · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
890191 890191 PRJNA908278_P_NODE_1541_length_877_cov_11.643035_g1459_i0 PRJNA908278 1541 877 11.643035 102.10941695 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 60.2 5.28e-4   NTclustered gi|2814788332|emb|OY762228.2| 240139 g1459 i0 97.143 0.0399087799315849 35 1 4 0 538 572 3980971 3980937 MAG: uncultured Desulfobacter sp. isolate cd87f30c-30a5-471b-81aa-180dc00a34f5 genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.
4718971 4718971 PRJNA908278_P_NODE_6184_length_471_cov_4.412060_g6081_i0 PRJNA908278 6184 471 4.41206 20.7808026 Pseudodesulfovibrio sp. zrk46 2725288 Bacteria Bacteria 60.2 2.74e-4   NTclustered gi|1832582227|gb|CP051216.1| 2725288 g6081 i0 94.872 0.719745222929936 39 1 8 1 250 288 470351 470388 Pseudodesulfovibrio sp. zrk46 chromosome, complete genome blastn 339 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sp. zrk46
9818029 9818029 PRJNA908278_P_NODE_12748_length_347_cov_1.401460_g12645_i0 PRJNA908278 12748 347 1.40146 4.8630662 root 1 Root_unresolved Root_unresolved 154 4.52e-42   NR WP_092345590.1 37625 g12645 i0 74.3 7.91066282420749 101 25 87.3 1 1 303 380 479 WP_092345590.1 adenosylhomocysteinase [Desulfuromusa kysingii] diamond 2745 155 0.993548387096774 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Desulfuromusa Desulfuromusa kysingii
11093724 11093724 PRJNA908278_P_NODE_10229_length_379_cov_1.241830_g10126_i0 PRJNA908278 10229 379 1.24183 4.7065357 Desulfovibrio subterraneus 2718620 Bacteria Bacteria 135 7.72e-34   NR WP_174405317.1 2718620 g10126 i0 59.5 7.95514511873351 126 45 99.7 1 378 1 481 600 WP_174405317.1 ATP-dependent chaperone ClpB [Desulfovibrio subterraneus] diamond 3015 135 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio subterraneus
26683519 26683519 PRJNA908278_P_NODE_11901_length_357_cov_1.341549_g11798_i0 PRJNA908278 11901 357 1.341549 4.78932993 Desulfosalsimonas 377149 Bacteria Bacteria 48.9 1.79e-4   NR WP_220128339.1 332175 g11798 i0 31.1 2.23529411764706 74 50 61.3 1 298 80 21 94 WP_220128339.1 DUF1330 domain-containing protein [Desulfosalsimonas propionicica] diamond 798 48.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosalsimonadaceae Desulfosalsimonas Desulfosalsimonas propionicica
29424200 29424200 PRJNA908278_P_NODE_19569_length_290_cov_1.170507_g19466_i0 PRJNA908278 19569 290 1.170507 3.3944703 Malonomonas sp. 3050478 Bacteria Bacteria 52.4 2.55e-5   NR HEY5673455.1 3050478 g19466 i0 40 1.30344827586207 70 38 68.3 2 91 288 20 89 HEY5673455.1 ATP-binding protein [Malonomonas sp.] diamond 378 52.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Malonomonas Malonomonas sp.
30474364 30474364 PRJNA908278_P_NODE_35573_length_241_cov_0.916667_g35470_i0 PRJNA908278 35573 241 0.916667 2.20916747 Thermodesulfobacteriota 200940 Bacteria Bacteria 99.4 1.3e-22   NR WP_035239590.1 34031 g35470 i0 57 3.93360995850622 79 34 98.3 0 239 3 268 346 WP_035239590.1 2-aminoethylphosphonate--pyruvate transaminase [Desulfobacter vibrioformis] diamond 948 100 0.994 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter vibrioformis
30814270 30814270 PRJNA908278_P_NODE_574_length_1265_cov_2.537752_g529_i0 PRJNA908278 574 1265 2.537752 32.1025628 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 59.7 3.13e-6   NR GJM17643.1 2202153 g529 i0 41.1 0.173122529644269 73 43 17.3 0 1055 837 141 213 GJM17643.1 MAG: hypothetical protein DHS20C13_29700 [Thermodesulfobacteriota bacterium] diamond 219 59.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
31067279 31067279 PRJNA908278_P_NODE_9075_length_398_cov_1.861538_g8972_i0 PRJNA908278 9075 398 1.861538 7.40892124 Desulfacinum infernum 35837 Bacteria Bacteria 96.7 2.55e-20   NR WP_073039723.1 35837 g8972 i0 46.2 2.51005025125628 104 56 78.4 0 313 2 24 127 WP_073039723.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Desulfacinum infernum] diamond 999 96.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfacinum Desulfacinum infernum
31359179 31359179 PRJNA908278_P_NODE_2516_length_706_cov_2.856240_g2417_i0 PRJNA908278 2516 706 2.85624 20.1650544 Geobacter 28231 Bacteria Bacteria 134 8.459999999999998e-35   NR RII25625.1 46610 g2417 i0 39.8 1.52549575070822 181 107 76.1 1 24 560 41 221 RII25625.1 MAG: CAP domain-containing protein [Geobacter sp.] diamond 1077 135 0.992592592592593 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
32205753 32205753 PRJNA908278_P_NODE_33058_length_244_cov_0.900585_g32955_i0 PRJNA908278 33058 244 0.900585 2.1974274 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 49.7 1.32e-4   NR MEE8423992.1 2202153 g32955 i0 35.8 0.995901639344262 81 48 99.6 1 243 1 253 329 MEE8423992.1 VWA domain-containing protein [Thermodesulfobacteriota bacterium] diamond 243 49.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32554086 32554086 PRJNA908278_P_NODE_9879_length_384_cov_2.787781_g9776_i0 PRJNA908278 9879 384 2.787781 10.70507904 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 46.6 0.0065   NR MEW6298056.1 2202153 g9776 i0 31.6 0.59375 76 50 59.4 1 249 22 207 280 MEW6298056.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 228 46.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32742847 32742847 PRJNA908278_P_NODE_11760_length_359_cov_0.877622_g11657_i0 PRJNA908278 11760 359 0.877622 3.15066298 Desulfobacterales bacterium 2044940 Bacteria Bacteria 46.2 0.00792   NR MCD4764364.1 2044940 g11657 i0 28.5 1.31197771587744 123 75 94.4 3 357 19 191 310 MCD4764364.1 SDR family NAD(P)-dependent oxidoreductase [Desulfobacterales bacterium] diamond 471 46.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32750158 32750158 PRJNA908278_P_NODE_18840_length_295_cov_1.139640_g18737_i0 PRJNA908278 18840 295 1.13964 3.361938 Pseudomonadati 3379134 Bacteria Bacteria 75.5 2.15e-13   NR VBB41500.1 1748965 g18737 i0 39.6 24.7322033898305 101 54 95.6 2 13 294 101 201 VBB41500.1 ATP-dependent zinc metalloprotease FtsH [uncultured Desulfatiglans sp.] diamond 7296 75.9 0.994729907773386 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfatiglandales Desulfatiglandaceae Desulfatiglans uncultured Desulfatiglans sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;