RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA908278", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA908278 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22567249 22567249 PRJNA908278_P_NODE_11398_length_363_cov_2.965517_g11295_i0 PRJNA908278 11398 363 2.965517 10.76482671 Eukaryota 2759 Fungi Fungi 214 6.14e-64   NR BAL15353.1 70189 g11295 i0 84.3 9 121 19 100 0 1 363 362 482 BAL15353.1 translation elongation factor 2, partial [Olpidium brassicae] diamond 3267 214 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
31889181 31889181 PRJNA908278_P_NODE_13657_length_338_cov_1.090566_g13554_i0 PRJNA908278 13657 338 1.090566 3.68611308 Olpidium bornovanus 278681 Fungi Fungi 58.5 2.97e-7   NR KAG5458604.1 278681 g13554 i0 34.8 0.994082840236686 112 68 96.7 2 334 8 113 222 KAG5458604.1 MAG: hypothetical protein BJ554DRAFT_1143 [Olpidium bornovanus] diamond 336 58.5 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;