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contig_metadata

28 rows where bioproject = "PRJNA908278", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 28 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 28 ✖

bioproject 1

  • PRJNA908278 · 28 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7268370 7268370 PRJNA908278_P_NODE_22246_length_275_cov_1.425743_g22143_i0 PRJNA908278 22246 275 1.425743 3.92079325 Pseudomonadati 3379134 Bacteria Bacteria 86.7 7.36e-18   NR MBT3293848.1 2026799 g22143 i0 48.4 9.52363636363636 91 42 99.3 1 2 274 197 282 MBT3293848.1 3'(2'),5'-bisphosphate nucleotidase [Verrucomicrobiota bacterium] diamond 2619 86.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
20017026 20017026 PRJNA908278_P_NODE_8436_length_411_cov_1.594675_g8333_i0 PRJNA908278 8436 411 1.594675 6.55411425 Bacteria 2 Bacteria Bacteria 175 1.18e-50   NR MDR3815495.1 1872421 g8333 i0 60.3 20.7445255474453 131 52 95.6 0 19 411 33 163 MDR3815495.1 phosphoenolpyruvate carboxykinase (GTP) [Akkermansia sp.] diamond 8526 176 0.994318181818182 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
26644306 26644306 PRJNA908278_P_NODE_18641_length_296_cov_1.461883_g18538_i0 PRJNA908278 18641 296 1.461883 4.32717368 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 44.3 0.0198   NR HZE57439.1 2201154 g18538 i0 35.8 0.679054054054054 67 43 67.9 0 87 287 266 332 HZE57439.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 201 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
26675877 26675877 PRJNA908278_P_NODE_20321_length_286_cov_1.244131_g20218_i0 PRJNA908278 20321 286 1.244131 3.55821466 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 94.4 1.05e-20   NR MFM1941488.1 2026799 g20218 i0 46.2 5.67482517482518 93 50 97.6 0 279 1 189 281 MFM1941488.1 Choline-sulfatase [Verrucomicrobiota bacterium] diamond 1623 94.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26842196 26842196 PRJNA908278_P_NODE_31661_length_245_cov_0.895349_g31558_i0 PRJNA908278 31661 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 113 1.2799999999999999e-28   NR SPE59516.1 2026799 g31558 i0 69.1 7.93469387755102 81 25 99.2 0 1 243 137 217 SPE59516.1 Uncharacterized oxidoreductase YvaG [Verrucomicrobiota bacterium] diamond 1944 114 0.991228070175439 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27157984 27157984 PRJNA908278_P_NODE_5162_length_510_cov_3.304348_g5059_i0 PRJNA908278 5162 510 3.304348 16.8521748 root 1 Root_unresolved Root_unresolved 133 1.38e-32   NR MEO1825153.1 2024856 g5059 i0 44.7 4.59411764705882 152 77 87.1 5 53 496 665 813 MEO1825153.1 Kazal-type serine protease inhibitor domain-containing protein [Roseibacillus sp.] diamond 2343 134 0.992537313432836 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseibacillus Roseibacillus sp.
27189784 27189784 PRJNA908278_P_NODE_33702_length_243_cov_0.905882_g33599_i0 PRJNA908278 33702 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 50.1 9.24e-5   NR MBV9733672.1 2026799 g33599 i0 45.9 3.87654320987654 74 38 88.9 2 15 230 290 363 MBV9733672.1 ABC transporter substrate-binding protein [Verrucomicrobiota bacterium] diamond 942 50.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27853089 27853089 PRJNA908278_P_NODE_18024_length_301_cov_1.179825_g17921_i0 PRJNA908278 18024 301 1.179825 3.55127325 root 1 Root_unresolved Root_unresolved 113 6.3e-27   NR WP_184341484.1 48466 g17921 i0 59.4 6.8671096345515 101 38 97.7 2 295 2 18 118 WP_184341484.1 UTP--glucose-1-phosphate uridylyltransferase [Prosthecobacter vanneervenii] diamond 2067 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
28035242 28035242 PRJNA908278_P_NODE_18245_length_299_cov_1.362832_g18142_i0 PRJNA908278 18245 299 1.362832 4.07486768 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 121 2.3199999999999997e-30   NR MCX7712056.1 2201154 g18142 i0 58 1.00334448160535 100 41 99.3 1 298 2 207 306 MCX7712056.1 diaminopimelate decarboxylase [Chthoniobacterales bacterium] diamond 300 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28035246 28035246 PRJNA908278_P_NODE_2005_length_780_cov_11.287129_g1912_i0 PRJNA908278 2005 780 11.287129 88.0396062 Rubritalea spongiae 430797 Bacteria Bacteria 196 2.17e-56   NR WP_377092613.1 430797 g1912 i0 52.5 1.52307692307692 198 85 74.6 5 632 51 210 402 WP_377092613.1 glycoside hydrolase family 75 protein [Rubritalea spongiae] diamond 1188 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Rubritaleaceae Rubritalea Rubritalea spongiae
28350829 28350829 PRJNA908278_P_NODE_28226_length_249_cov_0.875000_g28123_i0 PRJNA908278 28226 249 0.875 2.17875 Pedosphaera sp. 2024890 Bacteria Bacteria 64.3 4.63e-10   NR MDB6112030.1 2024890 g28123 i0 37.8 0.987951807228916 82 46 94 2 1 234 131 211 MDB6112030.1 lipase class 3 [Pedosphaera sp.] diamond 246 64.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
28737289 28737289 PRJNA908278_P_NODE_9247_length_395_cov_0.757764_g9144_i0 PRJNA908278 9247 395 0.757764 2.9931678 Bacteria 2 Bacteria Bacteria 176 2e-49   NR HVS51339.1 2006848 g9144 i0 62.6 11.9392405063291 131 49 99.5 0 3 395 382 512 HVS51339.1 NAD-dependent malic enzyme [Opitutaceae bacterium] diamond 4716 177 0.994350282485876 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29298113 29298113 PRJNA908278_P_NODE_11629_length_360_cov_5.898955_g11526_i0 PRJNA908278 11629 360 5.898955 21.236238 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62 1.25e-9   NR MDA0346509.1 2026799 g11526 i0 44.6 0.9 56 29 46.7 1 80 247 18 71 MDA0346509.1 thioredoxin [Verrucomicrobiota bacterium] diamond 324 62 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29455581 29455581 PRJNA908278_P_NODE_11290_length_365_cov_1.054795_g11187_i0 PRJNA908278 11290 365 1.054795 3.85000175 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 79 3.1e-14   NR MDB4537232.1 2562705 g11187 i0 46.2 2.12054794520548 93 42 71.5 3 266 6 164 254 MDB4537232.1 serine/threonine protein kinase [Akkermansiaceae bacterium] diamond 774 79 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
29487362 29487362 PRJNA908278_P_NODE_29530_length_248_cov_0.880000_g29427_i0 PRJNA908278 29530 248 0.88 2.1824 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 78.6 9.8e-15   NR PYK02913.1 2026799 g29427 i0 57 2.84274193548387 79 31 95.6 1 4 240 45 120 PYK02913.1 MAG: hypothetical protein DME23_00700 [Verrucomicrobiota bacterium] diamond 705 78.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29645005 29645005 PRJNA908278_P_NODE_31150_length_246_cov_0.890173_g31047_i0 PRJNA908278 31150 246 0.890173 2.18982558 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 55.8 9.25e-7   NR MFM2297213.1 2026799 g31047 i0 42 0.98780487804878 81 47 98.8 0 3 245 736 816 MFM2297213.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 243 55.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29929807 29929807 PRJNA908278_P_NODE_1671_length_845_cov_5.546632_g1587_i0 PRJNA908278 1671 845 5.546632 46.8690404 Luteolibacter sp. 1962973 Bacteria Bacteria 57.4 3.19e-5   NR WP_348214599.1 1962973 g1587 i0 27.7 0.67810650887574 191 115 65.3 9 585 34 318 492 WP_348214599.1 RICIN domain-containing protein [Luteolibacter sp.] diamond 573 57.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
29961185 29961185 PRJNA908278_P_NODE_20251_length_286_cov_1.446009_g20148_i0 PRJNA908278 20251 286 1.446009 4.13558574 Puniceicoccus vermicola 388746 Bacteria Bacteria 103 1.9499999999999994e-23   NR WP_185694143.1 388746 g20148 i0 65.9 2.67482517482518 85 28 89.2 1 286 32 738 821 WP_185694143.1 FAD-dependent oxidoreductase [Puniceicoccus vermicola] diamond 765 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Puniceicoccaceae Puniceicoccus Puniceicoccus vermicola
30245775 30245775 PRJNA908278_P_NODE_22412_length_274_cov_1.378109_g22309_i0 PRJNA908278 22412 274 1.378109 3.77601866 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 59.3 2.73e-8   NR HWB59675.1 2811408 g22309 i0 44.8 0.952554744525547 87 42 95.3 3 9 269 58 138 HWB59675.1 hypothetical protein [Chthoniobacteraceae bacterium] diamond 261 59.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
30505859 30505859 PRJNA908278_P_NODE_12153_length_354_cov_1.096085_g12050_i0 PRJNA908278 12153 354 1.096085 3.8801409 Bacteria 2 Bacteria Bacteria 65.5 3.58e-10   NR WP_039721357.1 431057 g12050 i0 34.7 4.63559322033898 118 68 92.4 2 5 331 4 121 WP_039721357.1 MIP/aquaporin family protein [Methylacidiphilum kamchatkense] diamond 1641 65.9 0.993930197268589 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Methylacidiphilum kamchatkense
30561262 30561262 PRJNA908278_P_NODE_11093_length_367_cov_1.534014_g10990_i0 PRJNA908278 11093 367 1.534014 5.62983138 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 165 4.97e-46   NR HEV7923786.1 2499141 g10990 i0 58.9 2.02724795640327 124 48 98.9 2 365 3 359 482 HEV7923786.1 glycosyl hydrolase family 28-related protein [Verrucomicrobiia bacterium] diamond 744 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30782678 30782678 PRJNA908278_P_NODE_30154_length_247_cov_0.885057_g30051_i0 PRJNA908278 30154 247 0.885057 2.18609079 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.2 2.02e-13   NR MDH4454272.1 2026799 g30051 i0 54.1 0.898785425101215 74 32 89.9 1 17 238 22 93 MDH4454272.1 ubiquitin-like protein [Verrucomicrobiota bacterium] diamond 222 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31509899 31509899 PRJNA908278_P_NODE_25076_length_258_cov_1.664865_g24973_i0 PRJNA908278 25076 258 1.664865 4.2953517 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 51.2 4.3e-5   NR MBU6383445.1 2026799 g24973 i0 38.8 1.80232558139535 80 41 83.7 2 217 2 218 297 MBU6383445.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 465 51.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31509907 31509907 PRJNA908278_P_NODE_34536_length_242_cov_0.911243_g34433_i0 PRJNA908278 34536 242 0.911243 2.20520806 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 54.3 3.19e-6   NR MDI9401759.1 2026799 g34433 i0 43.7 3.65702479338843 71 34 80.6 2 38 232 842 912 MDI9401759.1 S8 family serine peptidase [Verrucomicrobiota bacterium] diamond 885 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32237699 32237699 PRJNA908278_P_NODE_32678_length_244_cov_0.900585_g32575_i0 PRJNA908278 32678 244 0.900585 2.1974274 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 82.8 2.81e-16   NR MBU4200851.1 2026799 g32575 i0 54.4 0.971311475409836 79 32 97.1 2 6 242 374 448 MBU4200851.1 carbohydrate kinase [Verrucomicrobiota bacterium] diamond 237 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32395636 32395636 PRJNA908278_P_NODE_2899_length_661_cov_2.323129_g2796_i0 PRJNA908278 2899 661 2.3231290000000002 15.35588269 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 184 9.4e-53   NR HEV7924992.1 2499141 g2796 i0 53.4 2.90922844175492 176 79 79 2 137 658 7 181 HEV7924992.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 1923 184 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32554059 32554059 PRJNA908278_P_NODE_26499_length_251_cov_0.865169_g26396_i0 PRJNA908278 26499 251 0.865169 2.17157419 Opitutia bacterium 2026771 Bacteria Bacteria 126 2.96e-33   NR MBT3470899.1 2026771 g26396 i0 72.7 0.920318725099602 77 21 92 0 1 231 108 184 MBT3470899.1 Gfo/Idh/MocA family oxidoreductase [Opitutia bacterium] diamond 231 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
32868610 32868610 PRJNA908278_P_NODE_13960_length_335_cov_1.175573_g13857_i0 PRJNA908278 13960 335 1.175573 3.93816955 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 68.6 9.6e-11   NR MBL9131746.1 2026800 g13857 i0 39.8 0.967164179104478 108 57 90.4 3 304 2 594 700 MBL9131746.1 nucleoside hydrolase [Verrucomicrobiaceae bacterium] diamond 324 68.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;