RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA908278", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA908278 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441170 3441170 PRJNA908278_P_NODE_343_length_1442_cov_2.145362_g312_i0 PRJNA908278 343 1442 2.145362 30.93612004 root 1 Root_unresolved Root_unresolved 520 2.8199999999999993e-179   NR MCI6289555.1 2053569 g312 i0 55.9 22.1130374479889 451 193 93.2 3 78 1421 4 451 MCI6289555.1 UDP-glucose 6-dehydrogenase [Lentisphaeria bacterium] diamond 31887 523 0.994263862332696 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
27529917 27529917 PRJNA908278_P_NODE_16563_length_312_cov_1.288703_g16460_i0 PRJNA908278 16563 312 1.288703 4.02075336 Victivallales bacterium 2212475 Bacteria Bacteria 127 2.66e-33   NR HJO92594.1 2212475 g16460 i0 60.4 0.971153846153846 101 40 97.1 0 309 7 34 134 HJO92594.1 ribokinase [Victivallales bacterium] diamond 303 127 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32490629 32490629 PRJNA908278_P_NODE_10279_length_378_cov_1.606557_g10176_i0 PRJNA908278 10279 378 1.606557 6.07278546 Lentisphaeria bacterium 2053569 Bacteria Bacteria 119 3.26e-28   NR MBR2364601.1 2053569 g10176 i0 55.1 0.849206349206349 107 46 83.3 1 352 38 489 595 MBR2364601.1 glutamine synthetase III [Lentisphaeria bacterium] diamond 321 119 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;