RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA908278", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA908278 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23842633 23842633 PRJNA908278_P_NODE_4479_length_545_cov_1.802966_g4376_i0 PRJNA908278 4479 545 1.802966 9.8261647 Fidelibacterota bacterium 2026760 Bacteria Bacteria 199 7.03e-61   NR NQV42165.1 2026760 g4376 i0 58.3 3.91926605504587 180 74 99.1 1 541 2 3 181 NQV42165.1 SDR family oxidoreductase [Fidelibacterota bacterium] diamond 2136 199 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
27340617 27340617 PRJNA908278_P_NODE_29723_length_247_cov_1.770115_g29620_i0 PRJNA908278 29723 247 1.770115 4.37218405 Fidelibacterota bacterium 2026760 Bacteria Bacteria 55.1 1.78e-6   NR MEC7736898.1 2026760 g29620 i0 58.3 0.437246963562753 36 15 43.7 0 177 70 37 72 MEC7736898.1 hypothetical protein [Fidelibacterota bacterium] diamond 108 55.1 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30119071 30119071 PRJNA908278_P_NODE_28672_length_249_cov_0.875000_g28569_i0 PRJNA908278 28672 249 0.875 2.17875 Fidelibacterota bacterium 2026760 Bacteria Bacteria 56.6 3.56e-7   NR MCF7833256.1 2026760 g28569 i0 42.4 0.795180722891566 66 37 79.5 1 209 12 2 66 MCF7833256.1 ZIP family metal transporter [Fidelibacterota bacterium] diamond 198 56.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;