RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA906294", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 9 ✖

tax_phylum 1

  • Kitrinoviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA906294 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8538265 8538265 PRJNA906294_P_NODE_104607_length_402_cov_0.778116_g100492_i0 PRJNA906294 104607 402 0.778116 3.12802632 Pestivirus brazilense 3052620 Viruses Viruses 701 0   NTclustered gi|2813517655|gb|PQ362005.1| 381707 g100492 i0 98.25 32.7910447761194 400 7 99 0 1 400 10922 11321 Bovine viral diarrhea virus 3 isolate HN2247, partial genome blastn 13182 701 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
9817403 9817403 PRJNA906294_P_NODE_75048_length_518_cov_1.058427_g70941_i0 PRJNA906294 75048 518 1.058427 5.48265186 Cucumovirus CMV 3428131 Viruses Viruses 891 0   NTclustered gi|2329659987|gb|OK558679.1| 12305 g70941 i0 97.683 100.362934362934 518 12 100 0 1 518 1321 1838 Cucumber mosaic virus isolate VRS-443 hypothetical protein gene, complete cds blastn 51988 891 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
11089317 11089317 PRJNA906294_P_NODE_116609_length_371_cov_1.268456_g112494_i0 PRJNA906294 116609 371 1.268456 4.70597176 Cucumovirus CMV 3428131 Viruses Viruses 580 3.639999999999999e-161   NTclustered gi|1483570685|gb|MH567342.1| 12305 g112494 i0 94.879 100.88679245283 371 19 100 0 1 371 886 1256 Cucumber mosaic virus isolate Kirinyaga1 1a protein gene, complete cds blastn 37429 580 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
20012288 20012288 PRJNA906294_P_NODE_117056_length_370_cov_1.249158_g112941_i0 PRJNA906294 117056 370 1.249158 4.6218846 Pestivirus brazilense 3052620 Viruses Viruses 656 0   NTclustered gi|2813517653|gb|PQ362004.1| 381707 g112941 i0 98.649 43.4513513513513 370 5 100 0 1 370 6436 6067 Bovine viral diarrhea virus 3 isolate HN2168, partial genome blastn 16077 656 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
20013904 20013904 PRJNA906294_P_NODE_186176_length_269_cov_1.377551_g182060_i0 PRJNA906294 186176 269 1.377551 3.70561219 Pestivirus brazilense 3052620 Viruses Viruses 459 1.2399999999999996e-124   NTclustered gi|2813517653|gb|PQ362004.1| 381707 g182060 i0 97.398 37.728624535316 269 7 100 0 1 269 2143 1875 Bovine viral diarrhea virus 3 isolate HN2168, partial genome blastn 10149 459 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
21290483 21290483 PRJNA906294_P_NODE_29857_length_1016_cov_3.262990_g26580_i0 PRJNA906294 29857 1016 3.26299 33.1519784 Cucumovirus CMV 3428131 Viruses Viruses 1659 0   NTclustered gi|2329660007|gb|OK558687.1| 12305 g26580 i0 96.161 99.7716535433071 1016 37 100 2 1 1016 31 1044 Cucumber mosaic virus isolate VRS-443 3a protein genes, complete cds blastn 101368 1659 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
22562498 22562498 PRJNA906294_P_NODE_109798_length_387_cov_2.751592_g105683_i0 PRJNA906294 109798 387 2.751592 10.64866104 Cucumovirus CMV 3428131 Viruses Viruses 649 0   NTclustered gi|1888362496|gb|MN326869.1| 12305 g105683 i0 96.899 99.6227390180879 387 12 100 0 1 387 1701 2087 Cucumber mosaic virus isolate EP-1 segment RNA3, complete sequence blastn 38554 649 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
22563252 22563252 PRJNA906294_P_NODE_140538_length_326_cov_1.039526_g136422_i0 PRJNA906294 140538 326 1.039526 3.38885476 Pestivirus brazilense 3052620 Viruses Viruses 575 1.4699999999999996e-159   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g136422 i0 98.466 57.8895705521472 326 5 100 0 1 326 6941 6616 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 18872 575 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
23837645 23837645 PRJNA906294_P_NODE_109039_length_389_cov_3.161392_g104924_i0 PRJNA906294 109039 389 3.161392 12.29781488 Cucumovirus CMV 3428131 Viruses Viruses 634 2.8999999999999995e-177   NTclustered gi|2217168049|gb|ON013887.1| 12305 g104924 i0 96.154 100.601542416452 390 12 100 2 1 389 1440 1053 Cucumber mosaic virus isolate DSMZ PV-0185 segment RNA 3, complete sequence blastn 39134 634 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;