RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA906294" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA906294 · 11 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7264140 7264140 PRJNA906294_P_NODE_131146_length_341_cov_2.604478_g127030_i0 PRJNA906294 131146 341 2.604478 8.88126998 Methanobacteriota archaeon 2026739 Archaea Archaea 169 9.019999999999999e-47   NR HEQ79020.1 2026739 g127030 i0 67.3 10.900293255132 113 37 99.4 0 1 339 262 374 HEQ79020.1 acetate--CoA ligase [Methanobacteriota archaeon] diamond 3717 169 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27688181 27688181 PRJNA906294_P_NODE_224504_length_243_cov_0.905882_g220388_i0 PRJNA906294 224504 243 0.905882 2.20129326 Thermoplasmata archaeon 1906666 Archaea Archaea 66.6 3.56e-12   NR RLF66471.1 1906666 g220388 i0 43.8 0.987654320987654 80 39 91.4 2 243 22 2 81 RLF66471.1 MAG: hypothetical protein DRN30_02075 [Thermoplasmata archaeon] diamond 240 66.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
27853084 27853084 PRJNA906294_P_NODE_85564_length_468_cov_1.154430_g81450_i0 PRJNA906294 85564 468 1.15443 5.4027324 root 1 Root_unresolved Root_unresolved 46.6 0.0169   NR MCI4330747.1 1906666 g81450 i0 32.9 2.82051282051282 140 76 79.5 4 392 21 1124 1261 MCI4330747.1 hypothetical protein [Thermoplasmata archaeon] diamond 1320 47 0.991489361702128 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28003722 28003722 PRJNA906294_P_NODE_185165_length_270_cov_1.401015_g181049_i0 PRJNA906294 185165 270 1.401015 3.7827405 Methanoregula sp. 2052170 Archaea Archaea 46.2 0.00286   NR MFA6332232.1 2052170 g181049 i0 33 1.95555555555556 88 54 97.8 2 2 265 238 320 MFA6332232.1 thioredoxin domain-containing protein [Methanoregula sp.] diamond 528 46.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
28035187 28035187 PRJNA906294_P_NODE_166565_length_290_cov_1.543779_g162449_i0 PRJNA906294 166565 290 1.543779 4.4769591 Candidatus Poseidoniia archaeon 2666348 Archaea Archaea 166 2.79e-49   NR MEO2179638.1 2666348 g162449 i0 83.3 10.9241379310345 96 16 99.3 0 290 3 29 124 MEO2179638.1 3,4-dihydroxy-2-butanone-4-phosphate synthase [Candidatus Poseidoniia archaeon] diamond 3168 166 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia       Candidatus Poseidoniia archaeon
28445680 28445680 PRJNA906294_P_NODE_154246_length_306_cov_0.978541_g150130_i0 PRJNA906294 154246 306 0.978541 2.99433546 Candidatus Sysuiplasma superficiale 2823368 Archaea Archaea 71.2 3.22e-12   NR MBX8644967.1 2823368 g150130 i0 41.8 0.96078431372549 98 57 96.1 0 304 11 145 242 MBX8644967.1 hypothetical protein [Candidatus Sysuiplasma superficiale] diamond 294 71.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Candidatus Sysuiplasmatales Candidatus Sysuiplasmataceae Candidatus Sysuiplasma Candidatus Sysuiplasma superficiale
28603506 28603506 PRJNA906294_P_NODE_187187_length_268_cov_1.379487_g183071_i0 PRJNA906294 187187 268 1.379487 3.69702516 Halobacteriales archaeon QS_4_7 1904752 Archaea Archaea 43.9 0.0195   NR PSP97764.1 1919178 g183071 i0 28.6 0.861940298507463 77 53 86.2 1 2 232 343 417 PSP97764.1 MAG: phosphoglucosamine mutase [Halobacteriales archaeon QS_4_70_19] diamond 231 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon QS_4_70_19
29273813 29273813 PRJNA906294_P_NODE_212029_length_247_cov_2.201149_g207913_i0 PRJNA906294 212029 247 2.201149 5.43683803 Methanobacteriati 3366610 Archaea Archaea 51.6 3.09e-5   NR MAV07334.1 2026739 g207913 i0 38.6 4.91902834008097 57 35 69.2 0 196 26 987 1043 MAV07334.1 hypothetical protein [Methanobacteriota archaeon] diamond 1215 51.6 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29810633 29810633 PRJNA906294_P_NODE_225491_length_243_cov_0.894118_g221375_i0 PRJNA906294 225491 243 0.894118 2.17270674 Thermococcaceae 2259 Archaea Archaea 70.9 4.27e-12   NR WP_013466457.1 55802 g221375 i0 58.8 1.85185185185185 51 21 63 0 31 183 201 251 WP_013466457.1 hypothetical protein [Thermococcus barophilus] diamond 450 70.9 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus barophilus
30277475 30277475 PRJNA906294_P_NODE_191512_length_264_cov_1.089005_g187396_i0 PRJNA906294 191512 264 1.089005 2.8749732 Candidatus Hydrothermarchaeota archaeon 2250275 Archaea Archaea 42.4 0.0263   NR RLG56997.1 2250275 g187396 i0 51.3 0.443181818181818 39 19 44.3 0 120 4 87 125 RLG56997.1 MAG: hypothetical protein DRN88_03320 [Candidatus Hydrothermarchaeota archaeon] diamond 117 42.4 1 Archaea   Methanobacteriati Candidatus Hydrothermarchaeota         Candidatus Hydrothermarchaeota archaeon
32403091 32403091 PRJNA906294_P_NODE_89319_length_453_cov_0.792105_g85205_i0 PRJNA906294 89319 453 0.792105 3.58823565 root 1 Root_unresolved Root_unresolved 87.8 4.6e-17   NR MEM0331403.1 2511821 g85205 i0 37.6 5.67549668874172 149 83 97.4 4 448 8 169 309 MEM0331403.1 translation elongation factor EF-1 subunit alpha [Archaeoglobaceae archaeon] diamond 2571 88.6 0.99097065462754 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae   Archaeoglobaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;