RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA906294", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA906294 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3439466 3439466 PRJNA906294_P_NODE_39403_length_840_cov_1.297262_g35710_i0 PRJNA906294 39403 840 1.297262 10.8970008 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 242 5e-76   NR KAF4756788.1 32597 g35710 i0 65.3 3.39285714285714 193 55 65.7 3 555 4 39 228 KAF4756788.1 hypothetical protein FOZ63_001655, partial [Perkinsus olseni] diamond 2850 242 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29179424 29179424 PRJNA906294_P_NODE_229749_length_241_cov_1.357143_g225633_i0 PRJNA906294 229749 241 1.357143 3.27071463 root 1 Root_unresolved Root_unresolved 102 5.87e-24   NR KAF4682066.1 32597 g225633 i0 64.6 9.75933609958506 79 28 98.3 0 239 3 100 178 KAF4682066.1 hypothetical protein FOZ60_011196 [Perkinsus olseni] diamond 2352 103 0.990291262135922 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29298084 29298084 PRJNA906294_P_NODE_217409_length_246_cov_0.878613_g213293_i0 PRJNA906294 217409 246 0.878613 2.16138798 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0372   NR XP_002776816.1 423536 g213293 i0 60.7 0.341463414634146 28 11 34.1 0 152 235 201 228 XP_002776816.1 p53 binding protein, putative [Perkinsus marinus ATCC 50983] diamond 84 42.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;