RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA906294", tax_clade = "FCB group" and tax_phylum = "Candidatus Cloacimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Cloacimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA906294 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27790141 27790141 PRJNA906294_P_NODE_80924_length_488_cov_2.518072_g76812_i0 PRJNA906294 80924 488 2.518072 12.28819136 Pseudomonadati 3379134 Bacteria Bacteria 179 1.9299999999999994e-54   NR PKN80893.1 2013733 g76812 i0 63 2.68032786885246 146 53 89.1 1 53 487 2 147 PKN80893.1 MAG: NAD(P)H:quinone oxidoreductase, partial [Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-1] diamond 1308 179 1 Bacteria FCB group Pseudomonadati Candidatus Cloacimonadota         Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-1
28192757 28192757 PRJNA906294_P_NODE_221526_length_244_cov_0.976608_g217410_i0 PRJNA906294 221526 244 0.976608 2.38292352 Candidatus Cloacimonadota bacterium 2030808 Bacteria Bacteria 42.7 0.0364   NR MBN2016750.1 2030808 g217410 i0 35.4 0.799180327868853 65 39 79.9 1 42 236 116 177 MBN2016750.1 NAD(P)/FAD-dependent oxidoreductase [Candidatus Cloacimonadota bacterium] diamond 195 42.7 1 Bacteria FCB group Pseudomonadati Candidatus Cloacimonadota         Candidatus Cloacimonadota bacterium
31612109 31612109 PRJNA906294_P_NODE_108936_length_390_cov_1.082019_g104821_i0 PRJNA906294 108936 390 1.082019 4.2198741 Pseudomonadati 3379134 Bacteria Bacteria 65.9 1.67e-9   NR OQC11158.1 1852835 g104821 i0 48 4.04615384615385 75 38 57.7 1 241 17 1666 1739 OQC11158.1 MAG: hypothetical protein BWX75_00145 [Candidatus Cloacimonetes bacterium ADurb.Bin088] diamond 1578 65.9 1 Bacteria FCB group Pseudomonadati Candidatus Cloacimonadota         Candidatus Cloacimonetes bacterium ADurb.Bin088

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;