RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA904835" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 12 ✖

bioproject 1

  • PRJNA904835 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3434337 3434337 PRJNA904835_P_NODE_55943_length_245_cov_0.895349_g55687_i0 PRJNA904835 55943 245 0.895349 2.19360505 Begomovirus 10814 Viruses Viruses 79 4.46e-15   NR AGZ91416.1 10832 g55687 i0 66 7.62857142857143 53 18 64.9 0 243 85 299 351 AGZ91416.1 replication associated protein [Tomato yellow leaf curl virus] diamond 1869 79.3 0.996216897856242 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus coheni
7625325 7625325 PRJNA904835_P_NODE_16506_length_506_cov_1.905312_g16252_i0 PRJNA904835 16506 506 1.905312 9.64087872 Alphanecrovirus 1299309 Viruses Viruses 54.7 0.014   NTclustered gi|2273761011|gb|OL472227.1| 12054 g16252 i0 100 0.114624505928854 29 0 6 0 159 187 1284 1256 MAG: Unidentified tobacco necrosis virus isolate PAR19AT, complete genome blastn 58 54.7 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   unidentified tobacco necrosis virus
16185237 16185237 PRJNA904835_P_NODE_14913_length_538_cov_1.006452_g14661_i0 PRJNA904835 14913 538 1.006452 5.41471176 Yellow silver pine badnavirus 5 3068784 Viruses Viruses 82 1.85e-14   NR WPR16502.1 3068784 g14661 i0 73.9 1.02602230483271 46 12 25.7 0 217 354 1054 1099 WPR16502.1 MAG: polyprotein [Yellow silver pine badnavirus 5] diamond 552 82 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Yellow silver pine badnavirus 5
18735190 18735190 PRJNA904835_P_NODE_56635_length_244_cov_0.900585_g56379_i0 PRJNA904835 56635 244 0.900585 2.1974274 aphis 2 virus 3041036 Viruses Viruses 451 1.86e-122   NTclustered gi|2638767858|tpg|BK063262.1| 3041036 g56379 i0 100 1 244 0 100 0 1 244 1933 2176 TPA_asm: Aphis 2 virus replicase protein gene, complete cds blastn 244 451 1 Viruses               aphis 2 virus
18735198 18735198 PRJNA904835_P_NODE_56955_length_243_cov_2.258824_g56699_i0 PRJNA904835 56955 243 2.258824 5.48894232 Begomovirus nicotianae 3426882 Viruses Viruses 58.4 4.71e-4   NTclustered gi|1817986057|gb|MN481176.1| 180526 g56699 i0 100 5.12345679012346 31 0 13 0 105 135 2732 2702 Tobacco curly shoot virus isolate YN6303 clone 9, complete genome blastn 1245 58.4 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus nicotianae
20009927 20009927 PRJNA904835_P_NODE_42876_length_286_cov_1.079812_g42620_i0 PRJNA904835 42876 286 1.079812 3.08826232 Begomovirus 10814 Viruses Viruses 149 1.75e-41   NR QIJ32567.1 10832 g42620 i0 74 11.0769230769231 96 19 94.4 1 16 285 31 126 QIJ32567.1 replication protein [Tomato yellow leaf curl virus] diamond 3168 149 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus coheni
20373694 20373694 PRJNA904835_P_NODE_35596_length_323_cov_1.540000_g35340_i0 PRJNA904835 35596 323 1.54 4.9742 Gammaretrovirus 153135 Viruses Viruses 592 1.4499999999999999e-164   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g35340 i0 99.69 100 323 1 100 0 1 323 4050 3728 Moloney murine leukemia virus, complete genome blastn 32300 592 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
25474180 25474180 PRJNA904835_P_NODE_6760_length_835_cov_1.274278_g6553_i0 PRJNA904835 6760 835 1.274278 10.6402213 Moloney murine leukemia virus 11801 Viruses Viruses 516 1.73e-167   NR NP_057933.2 11801 g6553 i0 97.6 7.26826347305389 253 6 90.9 0 76 834 658 910 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 6069 516 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27727250 27727250 PRJNA904835_P_NODE_45384_length_274_cov_1.532338_g45128_i0 PRJNA904835 45384 274 1.532338 4.19860612 Gammaretrovirus 153135 Viruses Viruses 170 1.0099999999999999e-46   NR NP_057933.2 11801 g45128 i0 95.6 13.7627737226277 90 4 98.5 0 3 272 1165 1254 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 3771 170 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29171833 29171833 PRJNA904835_P_NODE_58449_length_242_cov_0.911243_g58193_i0 PRJNA904835 58449 242 0.911243 2.20520806 Blackberry virus F 2560349 Viruses Viruses 109 1.01e-25   NR XHV14367.1 2560349 g58193 i0 66.3 5.9504132231405 80 27 99.2 0 1 240 1489 1568 XHV14367.1 MAG: polyprotein [Blackberry virus F] diamond 1440 109 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus phirubi
29803093 29803093 PRJNA904835_P_NODE_39611_length_301_cov_2.026316_g39355_i0 PRJNA904835 39611 301 2.026316 6.09921116 Peanut chlorotic streak virus 35593 Viruses Viruses 85.1 8.46e-17   NR NP_042512.1 35593 g39355 i0 53.9 0.887043189368771 89 25 72.8 2 223 5 190 278 NP_042512.1 hypothetical protein [Peanut chlorotic streak virus] diamond 267 85.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Soymovirus Soymovirus virgarachidis
32458844 32458844 PRJNA904835_P_NODE_44079_length_280_cov_1.487923_g43823_i0 PRJNA904835 44079 280 1.487923 4.1661844 Blackberry virus F 2560349 Viruses Viruses 128 4.219999999999999e-32   NR XHV14355.1 2560349 g43823 i0 65.6 5.97857142857143 93 32 99.6 0 1 279 1497 1589 XHV14355.1 MAG: polyprotein [Blackberry virus F] diamond 1674 128 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus phirubi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;