RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA904835" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA904835 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27403672 27403672 PRJNA904835_P_NODE_13143_length_578_cov_6.081188_g12892_i0 PRJNA904835 13143 578 6.081188 35.14926664 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 0.00139   NR XP_004351526.1 1257118 g12892 i0 46.9 0.254325259515571 49 26 25.4 0 55 201 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29487231 29487231 PRJNA904835_P_NODE_44150_length_280_cov_1.115942_g43894_i0 PRJNA904835 44150 280 1.115942 3.1246376 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.8 1.05e-6   NR XP_004339488.1 1257118 g43894 i0 44.8 0.621428571428571 58 32 62.1 0 245 72 96 153 XP_004339488.1 uncharacterized protein ACA1_062170 [Acanthamoeba castellanii str. Neff] diamond 174 55.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29803084 29803084 PRJNA904835_P_NODE_22091_length_426_cov_9.354108_g21836_i0 PRJNA904835 22091 426 9.354108 39.84850008 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 5.7e-4   NR XP_004351526.1 1257118 g21836 i0 46.9 0.345070422535211 49 26 34.5 0 61 207 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;