RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA904835" and tax_phylum = "Candidatus Gottesmaniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Gottesmaniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA904835 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30561175 30561175 PRJNA904835_P_NODE_51553_length_250_cov_0.870056_g51297_i0 PRJNA904835 51553 250 0.870056 2.17514 Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_ 2282145 Bacteria Bacteria 43.5 0.00411   NR OGG26561.1 1798388 g51297 i0 48.6 0.42 35 18 42 0 202 98 52 86 OGG26561.1 MAG: hypothetical protein A2960_03700 [Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_01_FULL_39_12b] diamond 105 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Gottesmaniibacteriota         Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_01_FULL_39_12b

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;