RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA904835" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA904835 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30751060 30751060 PRJNA904835_P_NODE_54214_length_247_cov_0.885057_g53958_i0 PRJNA904835 54214 247 0.885057 2.18609079 Haloarchaeobius amylolyticus 1198296 Archaea Archaea 45.4 0.00427   NR WP_267639183.1 1198296 g53958 i0 52.6 0.461538461538462 38 18 46.2 0 193 80 341 378 WP_267639183.1 DUF3179 domain-containing protein [Haloarchaeobius amylolyticus] diamond 114 45.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halorubellaceae Haloarchaeobius Haloarchaeobius amylolyticus
32844549 32844549 PRJNA904835_P_NODE_55720_length_245_cov_0.895349_g55464_i0 PRJNA904835 55720 245 0.895349 2.19360505 Methanoculleus 45989 Archaea Archaea 56.6 4.32e-7   NR MCK9298840.1 90427 g55464 i0 40.8 2.4 76 31 93.1 2 245 18 172 233 MCK9298840.1 exo-alpha-sialidase [Methanoculleus sp.] diamond 588 56.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;