RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA904835" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA904835 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27656313 27656313 PRJNA904835_P_NODE_52484_length_249_cov_0.875000_g52228_i0 PRJNA904835 52484 249 0.875 2.17875 Streptobacillus moniliformis 34105 Bacteria Bacteria 40 0.0347   NR WP_081256141.1 34105 g52228 i0 64 0.301204819277108 25 9 30.1 0 246 172 13 37 WP_081256141.1 DUF4116 domain-containing protein [Streptobacillus moniliformis] diamond 75 40 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis
31003819 31003819 PRJNA904835_P_NODE_26614_length_384_cov_1.225080_g26358_i0 PRJNA904835 26614 384 1.22508 4.7043072 unclassified Fusobacterium 2648384 Bacteria Bacteria 64.7 3.59e-9   NR WP_249168840.1 2648384 g26358 i0 33.5 1.2109375 155 66 93.8 5 384 25 276 428 WP_249168840.1 MULTISPECIES: ATP-dependent helicase [unclassified Fusobacterium] diamond 465 64.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;