RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA904835" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA904835 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27663836 27663836 PRJNA904835_P_NODE_51744_length_250_cov_0.870056_g51488_i0 PRJNA904835 51744 250 0.870056 2.17514 Viridiplantae 33090 Plants Plants 74.7 8.01e-14   NR XP_002954017.1 3068 g51488 i0 55.7 6.9 61 27 73.2 0 250 68 207 267 XP_002954017.1 component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] diamond 1725 74.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
28358165 28358165 PRJNA904835_P_NODE_25526_length_393_cov_2.828125_g25270_i0 PRJNA904835 25526 393 2.828125 11.11453125 Eukaryota 2759 Plants Plants 47.8 0.0022   NR GFR47464.1 47775 g25270 i0 40 2.25190839694656 75 45 57.3 0 366 142 118 192 GFR47464.1 hypothetical protein Agub_g9191 [Astrephomene gubernaculifera] diamond 885 48.1 0.993762993762994 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
29550407 29550407 PRJNA904835_P_NODE_58590_length_241_cov_1.654762_g58334_i0 PRJNA904835 58590 241 1.654762 3.98797642 Trebouxia sp. C 2796353 Plants Plants 47.8 6.06e-4   NR KAL0055698.1 2905655 g58334 i0 38.8 1.71784232365145 67 26 64.7 2 236 81 563 629 KAL0055698.1 hypothetical protein WJX82_003353 [Trebouxia sp. C0006] diamond 414 47.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0006
30348338 30348338 PRJNA904835_P_NODE_52232_length_249_cov_0.875000_g51976_i0 PRJNA904835 52232 249 0.875 2.17875 Eukaryota 2759 Plants Plants 79.3 2.1e-16   NR KAG2439184.1 51695 g51976 i0 51.2 10.8674698795181 82 40 98.8 0 248 3 40 121 KAG2439184.1 hypothetical protein HXX76_004548 [Chlamydomonas incerta] diamond 2706 79.7 0.994981179422836 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
30979889 30979889 PRJNA904835_P_NODE_58914_length_241_cov_0.916667_g58658_i0 PRJNA904835 58914 241 0.916667 2.20916747 Eukaryota 2759 Plants Plants 73.9 3.72e-13   NR KAL4852792.1 3077 g58658 i0 47.6 9.48547717842324 84 37 95.9 1 231 1 146 229 KAL4852792.1 40S ribosomal protein S7-1 [Chlorella vulgaris] diamond 2286 74.3 0.994616419919246 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
31169077 31169077 PRJNA904835_P_NODE_47155_length_266_cov_1.196891_g46899_i0 PRJNA904835 47155 266 1.196891 3.18373006 Eukaryota 2759 Plants Plants 47.4 0.00116   NR YP_009326894.1 589376 g46899 i0 69.2 1.17293233082707 26 8 29.3 0 108 31 681 706 YP_009326894.1 photosystem I P700 chlorophyll a apoprotein A2 [Codium simulans] diamond 312 47.8 0.99163179916318 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium simulans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;