RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA904835", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA904835 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14001443 14001443 PRJNA904835_P_NODE_52031_length_249_cov_1.312500_g51775_i0 PRJNA904835 52031 249 1.3125 3.268125 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 139 4.59e-36   NR XP_008610586.1 1156394 g51775 i0 78 4.93975903614458 82 18 98.8 0 246 1 19 100 XP_008610586.1 hypothetical protein SDRG_06578 [Saprolegnia diclina VS20] diamond 1230 139 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
30529723 30529723 PRJNA904835_P_NODE_44293_length_279_cov_1.495146_g44037_i0 PRJNA904835 44293 279 1.495146 4.17145734 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 58.9 1.04e-7   NR KAF0717784.1 120398 g44037 i0 45.8 1.62365591397849 72 36 75.3 2 65 274 21 91 KAF0717784.1 hypothetical protein As57867_002096 [Aphanomyces stellatus] diamond 453 58.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32213253 32213253 PRJNA904835_P_NODE_31858_length_346_cov_1.128205_g31602_i0 PRJNA904835 31858 346 1.128205 3.9035893 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 158 9.49e-43   NR XP_024573476.1 4781 g31602 i0 67.6 15.7890173410405 108 35 93.6 0 1 324 541 648 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 5463 159 0.993710691823899 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;