RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA904835", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA904835 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27506014 27506014 PRJNA904835_P_NODE_41663_length_291_cov_1.412844_g41407_i0 PRJNA904835 41663 291 1.412844 4.11137604 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 45.1 8.72e-4   NR CEO97978.1 37360 g41407 i0 39.1 0.958762886597938 46 28 47.4 0 217 80 12 57 CEO97978.1 hypothetical protein PBRA_006092 [Plasmodiophora brassicae] diamond 279 45.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28982464 28982464 PRJNA904835_P_NODE_51548_length_250_cov_0.870056_g51292_i0 PRJNA904835 51548 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 105 4.44e-24   NR CEO97171.1 37360 g51292 i0 62.7 0.996 83 30 99.6 1 2 250 425 506 CEO97171.1 hypothetical protein PBRA_005775 [Plasmodiophora brassicae] diamond 249 105 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;