RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA904835", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA904835 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26802630 26802630 PRJNA904835_P_NODE_49621_length_255_cov_0.829670_g49365_i0 PRJNA904835 49621 255 0.82967 2.1156585 Neochlamydia sp. TUME1 1478174 Bacteria Bacteria 40.4 0.0455   NR WP_080502455.1 1478174 g49365 i0 46.2 0.458823529411765 39 21 45.9 0 164 48 5 43 WP_080502455.1 DUF4116 domain-containing protein [Neochlamydia sp. TUME1] diamond 117 40.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. TUME1
27940397 27940397 PRJNA904835_P_NODE_20085_length_451_cov_2.055556_g19830_i0 PRJNA904835 20085 451 2.055556 9.27055756 Candidatus Protochlamydia amoebophila 362787 Bacteria Bacteria 111 2.22e-27   NR WP_213106507.1 362787 g19830 i0 48.8 2.5410199556541 123 59 81.2 3 366 1 7 126 WP_213106507.1 histidine phosphatase family protein [Candidatus Protochlamydia amoebophila] diamond 1146 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
30687665 30687665 PRJNA904835_P_NODE_28333_length_371_cov_1.013423_g28077_i0 PRJNA904835 28333 371 1.013423 3.75979933 Simkaniaceae bacterium 2698248 Bacteria Bacteria 52.8 4.86e-5   NR MCF7851681.1 2698248 g28077 i0 33.3 1.78706199460916 120 73 97 3 362 3 111 223 MCF7851681.1 DUF4116 domain-containing protein [Simkaniaceae bacterium] diamond 663 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;