RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA904835", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA904835 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28066588 28066588 PRJNA904835_P_NODE_49145_length_257_cov_1.201087_g48889_i0 PRJNA904835 49145 257 1.201087 3.08679359 Pristionchus fissidentatus 1538716 Nematoda Nematoda 56.6 2.54e-7   NR GMT33859.1 1538716 g48889 i0 44.8 0.782101167315175 67 28 78.2 1 1 201 73 130 GMT33859.1 hypothetical protein PFISCL1PPCAC_25156, partial [Pristionchus fissidentatus] diamond 201 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
29550406 29550406 PRJNA904835_P_NODE_57150_length_243_cov_0.905882_g56894_i0 PRJNA904835 57150 243 0.905882 2.20129326 Toxocara canis 6265 Nematoda Nematoda 77 2.86e-14   NR KHN77057.1 6265 g56894 i0 52.1 5.80246913580247 73 35 90.1 0 25 243 348 420 KHN77057.1 Serpin B10 [Toxocara canis] diamond 1410 77 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32711058 32711058 PRJNA904835_P_NODE_9420_length_700_cov_2.628389_g9185_i0 PRJNA904835 9420 700 2.628389 18.398723 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 68.6 2.77e-9   NR KAE9548291.1 2598192 g9185 i0 42.2 0.355714285714286 83 48 35.6 0 699 451 601 683 KAE9548291.1 hypothetical protein FO519_008497 [Halicephalobus sp. NKZ332] diamond 249 68.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;