RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA904835", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA904835 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26929382 26929382 PRJNA904835_P_NODE_49902_length_253_cov_1.683333_g49646_i0 PRJNA904835 49902 253 1.683333 4.25883249 Quaeritorhiza haematococci 2654861 Fungi Fungi 79.3 1.79e-15   NR KAJ3089536.1 2654861 g49646 i0 49.4 0.960474308300395 81 39 96 1 249 7 202 280 KAJ3089536.1 hypothetical protein HK102_006178 [Quaeritorhiza haematococci] diamond 243 79.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes   Quaeritorhizaceae Quaeritorhiza Quaeritorhiza haematococci
30213706 30213706 PRJNA904835_P_NODE_56052_length_245_cov_0.889535_g55796_i0 PRJNA904835 56052 245 0.889535 2.17936075 Hyaloraphidium curvatum 82268 Fungi Fungi 55.5 1.25e-6   NR KAI9031192.1 82268 g55796 i0 43.4 0.930612244897959 76 38 93.1 2 230 3 127 197 KAI9031192.1 kinase-like domain-containing protein [Hyaloraphidium curvatum] diamond 228 55.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;