RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA904835", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA904835 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2158956 2158956 PRJNA904835_P_NODE_53062_length_248_cov_0.880000_g52806_i0 PRJNA904835 53062 248 0.88 2.1824 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 134 5.05e-35   NR MDD3720547.1 2044595 g52806 i0 73.2 4.94758064516129 82 22 99.2 0 247 2 92 173 MDD3720547.1 lysine--tRNA ligase [Candidatus Altimarinota bacterium] diamond 1227 134 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27782558 27782558 PRJNA904835_P_NODE_58884_length_241_cov_0.916667_g58628_i0 PRJNA904835 58884 241 0.916667 2.20916747 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 97.1 2.13e-21   NR MBW7954251.1 2044595 g58628 i0 61 0.95850622406639 77 30 95.9 0 3 233 25 101 MBW7954251.1 MiaB/RimO family radical SAM methylthiotransferase [Candidatus Altimarinota bacterium] diamond 231 97.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;