RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA902848" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA902848 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1247043 1247043 PRJNA902848_P_NODE_3361_length_432_cov_1.139276_g3311_i0 PRJNA902848 3361 432 1.139276 4.92167232 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 307 8.060000000000001e-79   NTclustered gi|290995459|ref|XM_002680267.1| 5762 g3311 i0 82.571 256.935185185185 350 60 81 1 80 429 468 816 Naegleria gruberi polyubiquitin (NAEGRDRAFT_56056), mRNA blastn 110996 307 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
2157454 2157454 PRJNA902848_P_NODE_4462_length_387_cov_1.907643_g4412_i0 PRJNA902848 4462 387 1.907643 7.38257841 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 710 0   NTclustered gi|2283788571|gb|OP179657.1| 74082 g4412 i0 100 83.7080103359173 384 0 99 0 4 387 1261 878 Vahlkampfia avara isolate VA7 small subunit ribosomal RNA gene, partial sequence blastn 32395 710 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
3432710 3432710 PRJNA902848_P_NODE_20663_length_201_cov_5.171875_g20613_i0 PRJNA902848 20663 201 5.171875 10.39546875 Naegleria jadini 51636 Heterolobosea other_Eukaryota 370 4.25e-98   NTclustered gi|2438257170|gb|OP997288.1| 51636 g20613 i0 100 10.4626865671642 200 0 99 0 2 201 6150 5951 Naegleria jadini strain ITMAP400 plasmid CERE, complete sequence blastn 2103 370 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jadini
9810024 9810024 PRJNA902848_P_NODE_6048_length_346_cov_2.395604_g5998_i0 PRJNA902848 6048 346 2.395604 8.28878984 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 640 5.4999999999999996e-179   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g5998 i0 100 87.271676300578 346 0 100 0 1 346 1894 1549 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 30196 640 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
13635608 13635608 PRJNA902848_P_NODE_1311_length_604_cov_3.561205_g1262_i0 PRJNA902848 1311 604 3.561205 21.5096782 Naegleria clarki 36333 Heterolobosea other_Eukaryota 863 0   NTclustered gi|2651357780|gb|PP174296.1| 36333 g1262 i0 98.178 25.3029801324503 494 9 82 0 111 604 4020 3527 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15283 863 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
14909764 14909764 PRJNA902848_P_NODE_12132_length_261_cov_2.489362_g12082_i0 PRJNA902848 12132 261 2.489362 6.49723482 Naegleria jadini 51636 Heterolobosea other_Eukaryota 477 3.3099999999999986e-130   NTclustered gi|2777861737|gb|PQ072231.1| 51636 g12082 i0 99.617 99.7547892720306 261 1 100 0 1 261 1644 1384 Naegleria jadini strain CCAP_1518_2_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 26036 477 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jadini
20008681 20008681 PRJNA902848_P_NODE_2376_length_488_cov_2.816867_g2326_i0 PRJNA902848 2376 488 2.816867 13.74631096 Naegleria jadini 51636 Heterolobosea other_Eukaryota 896 0   NTclustered gi|2777861737|gb|PQ072231.1| 51636 g2326 i0 99.795 98.2622950819672 488 1 100 0 1 488 589 1076 Naegleria jadini strain CCAP_1518_2_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 47952 896 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jadini
25107877 25107877 PRJNA902848_P_NODE_11340_length_270_cov_1.187817_g11290_i0 PRJNA902848 11340 270 1.187817 3.2071059 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 3.24e-41   NR XP_044561356.1 5763 g11290 i0 76.4 9.88888888888889 89 21 98.9 0 2 268 53 141 XP_044561356.1 uncharacterized protein FDP41_004542 [Naegleria fowleri] diamond 2670 150 0.993333333333333 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30592868 30592868 PRJNA902848_P_NODE_11013_length_273_cov_2.035000_g10963_i0 PRJNA902848 11013 273 2.035 5.55555 Acrasis kona 1008807 Heterolobosea other_Eukaryota 52.8 2.51e-6   NR KAL0478226.1 1008807 g10963 i0 35.9 2.6043956043956 78 49 85.7 1 12 245 1 77 KAL0478226.1 stum [Acrasis kona] diamond 711 52.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;