RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA902848", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA902848 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9809838 9809838 PRJNA902848_P_NODE_15548_length_249_cov_0.886364_g15498_i0 PRJNA902848 15548 249 0.886364 2.20704636 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 72.4 1.79e-13   NR CEO95857.1 37360 g15498 i0 61.8 1.36144578313253 55 20 66.3 1 249 85 134 187 CEO95857.1 hypothetical protein PBRA_004570 [Plasmodiophora brassicae] diamond 339 72.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
11085441 11085441 PRJNA902848_P_NODE_10289_length_281_cov_1.500000_g10239_i0 PRJNA902848 10289 281 1.5 4.215 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 140 2.84e-40   NR CEO97530.1 37360 g10239 i0 72 1.97508896797153 93 26 99.3 0 279 1 13 105 CEO97530.1 hypothetical protein PBRA_000875 [Plasmodiophora brassicae] diamond 555 140 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28382308 28382308 PRJNA902848_P_NODE_15186_length_250_cov_0.881356_g15136_i0 PRJNA902848 15186 250 0.881356 2.20339 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 105 2.4099999999999998e-24   NR AVG22654.1 37360 g15136 i0 58.8 0.96 80 33 96 0 245 6 611 690 AVG22654.1 MAPKKK7 [Plasmodiophora brassicae] diamond 240 105 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;