RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA902848" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA902848 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3432569 3432569 PRJNA902848_P_NODE_14923_length_250_cov_0.881356_g14873_i0 PRJNA902848 14923 250 0.881356 2.20339 Methanobacterium aridiramus 2584467 Archaea Archaea 327 3.36e-85   NTclustered gi|2523005876|gb|CP040735.1| 2584467 g14873 i0 90.476 5.548 252 19 99 3 3 250 1232346 1232096 Methanobacterium aridiramus strain CWC-01 chromosome, complete genome blastn 1387 327 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium aridiramus
31509746 31509746 PRJNA902848_P_NODE_18136_length_245_cov_0.906977_g18086_i0 PRJNA902848 18136 245 0.906977 2.22209365 Methanobacterium sp. 2164 Archaea Archaea 127 7.45e-36   NR MTK63400.1 2164 g18086 i0 82.2 0.893877551020408 73 13 89.4 0 221 3 1 73 MTK63400.1 pyridoxamine 5'-phosphate oxidase [Methanobacterium sp.] diamond 219 127 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;