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contig_metadata

21 rows where bioproject = "PRJNA902848", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 21 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 21 ✖

bioproject 1

  • PRJNA902848 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4710566 4710566 PRJNA902848_P_NODE_18064_length_245_cov_0.906977_g18014_i0 PRJNA902848 18064 245 0.906977 2.22209365 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 261 3.38e-65   NTclustered gi|2874253978|emb|OY970303.1| 412054 g18014 i0 86.066 99.2571428571429 244 32 99 2 1 243 1359119 1359361 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 24318 261 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5075128 5075128 PRJNA902848_P_NODE_18904_length_244_cov_0.912281_g18854_i0 PRJNA902848 18904 244 0.912281 2.22596564 FCB group 1783270 Bacteria Bacteria 136 4.77e-36   NR HEX6536236.1 2026741 g18854 i0 75.3 21.9098360655738 81 20 99.6 0 1 243 85 165 HEX6536236.1 multicopper oxidase family protein [Gemmatimonadaceae bacterium] diamond 5346 137 0.992700729927007 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
11085521 11085521 PRJNA902848_P_NODE_13589_length_252_cov_0.871508_g13539_i0 PRJNA902848 13589 252 0.871508 2.19620016 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 128 4.62e-36   NR HRZ10354.1 2448054 g13539 i0 98.4 0.738095238095238 62 1 73.8 0 65 250 1 62 HRZ10354.1 NAD(P)-binding domain-containing protein [Gemmatimonadales bacterium] diamond 186 128 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
17460076 17460076 PRJNA902848_P_NODE_13174_length_253_cov_0.866667_g13124_i0 PRJNA902848 13174 253 0.866667 2.19266751 Gemmatimonadetes bacterium SCN 7 1660163 Bacteria Bacteria 158 5.36e-44   NR ODT04656.1 1660163 g13124 i0 97.6 0.99604743083004 84 2 99.6 0 252 1 332 415 ODT04656.1 MAG: hypothetical protein ABS52_03395 [Gemmatimonadetes bacterium SCN 70-22] diamond 252 158 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium SCN 70-22
18733384 18733384 PRJNA902848_P_NODE_14435_length_251_cov_0.876404_g14385_i0 PRJNA902848 14435 251 0.876404 2.19977404 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 129 1.09e-32   NR MFN8668002.1 2026741 g14385 i0 79.5 0.99203187250996006 83 17 99.2 0 249 1 322 404 MFN8668002.1 AAA family ATPase [Gemmatimonadaceae bacterium] diamond 249 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
20008520 20008520 PRJNA902848_P_NODE_13856_length_252_cov_0.871508_g13806_i0 PRJNA902848 13856 252 0.871508 2.19620016 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 198 2.77e-46   NTclustered gi|575456455|gb|CP007128.1| 861299 g13806 i0 81.893 1.97222222222222 243 36 95 8 2 240 4156739 4156501 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 497 198 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
28161484 28161484 PRJNA902848_P_NODE_18405_length_245_cov_0.906977_g18355_i0 PRJNA902848 18405 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 99.4 4.62e-22   NR MCC6319373.1 2026741 g18355 i0 63 0.991836734693878 81 30 99.2 0 3 245 58 138 MCC6319373.1 response regulator [Gemmatimonadaceae bacterium] diamond 243 99.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28540411 28540411 PRJNA902848_P_NODE_14887_length_250_cov_0.881356_g14837_i0 PRJNA902848 14887 250 0.881356 2.20339 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 127 7.48e-35   NR HWP38926.1 2448054 g14837 i0 77.1 0.996 83 19 99.6 0 2 250 46 128 HWP38926.1 cation transporter [Gemmatimonadales bacterium] diamond 249 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29108631 29108631 PRJNA902848_P_NODE_12968_length_253_cov_0.866667_g12918_i0 PRJNA902848 12968 253 0.866667 2.19266751 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 152 5.22e-42   NR HOX21243.1 2448054 g12918 i0 86.9 0.99604743083004 84 11 99.6 0 2 253 50 133 HOX21243.1 DUF2779 domain-containing protein [Gemmatimonadales bacterium] diamond 252 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29487198 29487198 PRJNA902848_P_NODE_10570_length_278_cov_1.468293_g10520_i0 PRJNA902848 10570 278 1.468293 4.08185454 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 120 1.7900000000000002e-33   NR HOX20784.1 2448054 g10520 i0 85.5 1.48920863309353 69 10 74.5 0 276 70 22 90 HOX20784.1 MoaD/ThiS family protein [Gemmatimonadales bacterium] diamond 414 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29581776 29581776 PRJNA902848_P_NODE_19290_length_243_cov_0.917647_g19240_i0 PRJNA902848 19290 243 0.917647 2.22988221 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 132 1.49e-33   NR MCE9603221.1 2026742 g19240 i0 82.5 0.987654320987654 80 14 98.8 0 3 242 1381 1460 MCE9603221.1 hypothetical protein [Gemmatimonadota bacterium] diamond 240 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29803067 29803067 PRJNA902848_P_NODE_20351_length_242_cov_0.923077_g20301_i0 PRJNA902848 20351 242 0.923077 2.23384634 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 144 1.78e-41   NR HET9465202.1 2448054 g20301 i0 95 0.991735537190083 80 4 99.2 0 242 3 121 200 HET9465202.1 phosphoribosylglycinamide formyltransferase [Gemmatimonadales bacterium] diamond 240 144 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29929676 29929676 PRJNA902848_P_NODE_14471_length_251_cov_0.876404_g14421_i0 PRJNA902848 14471 251 0.876404 2.19977404 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 144 1.93e-39   NR TFG46727.1 2448054 g14421 i0 92.7 0.9800796812749 82 6 98 0 1 246 334 415 TFG46727.1 MAG: ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonadales bacterium] diamond 246 144 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30277388 30277388 PRJNA902848_P_NODE_16192_length_248_cov_0.891429_g16142_i0 PRJNA902848 16192 248 0.891429 2.21074392 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 117 3.41e-30   NR HEX6966268.1 2026741 g16142 i0 70.7 1.98387096774194 82 24 99.2 0 2 247 43 124 HEX6966268.1 sugar kinase [Gemmatimonadaceae bacterium] diamond 492 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30372207 30372207 PRJNA902848_P_NODE_17972_length_245_cov_0.906977_g17922_i0 PRJNA902848 17972 245 0.906977 2.22209365 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 120 1.99e-30   NR MBK6845210.1 2026742 g17922 i0 100 0.722448979591837 59 0 72.2 0 67 243 1 59 MBK6845210.1 hypothetical protein [Gemmatimonadota bacterium] diamond 177 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30561147 30561147 PRJNA902848_P_NODE_19913_length_242_cov_0.923077_g19863_i0 PRJNA902848 19913 242 0.923077 2.23384634 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 152 1.1599999999999999e-42   NR MBL8989908.1 2026742 g19863 i0 96.3 0.991735537190083 80 3 99.2 0 3 242 116 195 MBL8989908.1 GAF domain-containing sensor histidine kinase [Gemmatimonadota bacterium] diamond 240 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30592878 30592878 PRJNA902848_P_NODE_18473_length_245_cov_0.901163_g18423_i0 PRJNA902848 18473 245 0.901163 2.20784935 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 85.5 4.45e-18   NR HUF90176.1 2026742 g18423 i0 48.8 0.979591836734694 80 41 98 0 4 243 119 198 HUF90176.1 phytanoyl-CoA dioxygenase family protein [Gemmatimonadota bacterium] diamond 240 85.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30751024 30751024 PRJNA902848_P_NODE_13214_length_253_cov_0.866667_g13164_i0 PRJNA902848 13214 253 0.866667 2.19266751 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 119 5.37e-29   NR MCI0432222.1 2026742 g13164 i0 66.3 1.94466403162055 83 28 98.4 0 1 249 504 586 MCI0432222.1 BamA/TamA family outer membrane protein [Gemmatimonadota bacterium] diamond 492 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31636039 31636039 PRJNA902848_P_NODE_20436_length_242_cov_0.875740_g20386_i0 PRJNA902848 20436 242 0.87574 2.1192908 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 166 2.39e-51   NR HOX19346.1 2448054 g20386 i0 96.3 0.991735537190083 80 3 99.2 0 3 242 28 107 HOX19346.1 4a-hydroxytetrahydrobiopterin dehydratase [Gemmatimonadales bacterium] diamond 240 166 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32181611 32181611 PRJNA902848_P_NODE_11498_length_268_cov_1.292308_g11448_i0 PRJNA902848 11498 268 1.292308 3.46338544 Bacteria 2 Bacteria Bacteria 108 4.7199999999999995e-25   NR HEY5022424.1 2026741 g11448 i0 62.5 13.1194029850746 80 28 89.6 1 6 245 518 595 HEY5022424.1 glycoside hydrolase family 3 N-terminal domain-containing protein [Gemmatimonadaceae bacterium] diamond 3516 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32332455 32332455 PRJNA902848_P_NODE_15259_length_250_cov_0.881356_g15209_i0 PRJNA902848 15259 250 0.881356 2.20339 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 3.16e-31   NR HOX20743.1 2448054 g15209 i0 87.8 0.984 82 10 98.4 0 248 3 632 713 HOX20743.1 hypothetical protein [Gemmatimonadales bacterium] diamond 246 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;