RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA902848", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA902848 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28824069 28824069 PRJNA902848_P_NODE_16748_length_247_cov_0.896552_g16698_i0 PRJNA902848 16748 247 0.896552 2.21448344 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 111 2.14e-26   NR MBN1130714.1 2813024 g16698 i0 67.5 0.97165991902834 80 26 97.2 0 6 245 200 279 MBN1130714.1 PAS domain S-box protein [Chitinispirillaceae bacterium] diamond 240 111 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
29077099 29077099 PRJNA902848_P_NODE_18708_length_244_cov_0.912281_g18658_i0 PRJNA902848 18708 244 0.912281 2.22596564 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 97.1 2.83e-21   NR MBN2036087.1 2813024 g18658 i0 64.9 1.90573770491803 74 26 91 0 223 2 277 350 MBN2036087.1 sigma 54-interacting transcriptional regulator [Chitinispirillaceae bacterium] diamond 465 97.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
31604535 31604535 PRJNA902848_P_NODE_19536_length_243_cov_0.917647_g19486_i0 PRJNA902848 19536 243 0.917647 2.22988221 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 121 8.87e-30   NR MBN1577184.1 2813024 g19486 i0 74.2 2.19753086419753 89 14 98.8 1 241 2 688 776 MBN1577184.1 DUF2723 domain-containing protein [Chitinispirillaceae bacterium] diamond 534 121 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
32805498 32805498 PRJNA902848_P_NODE_14700_length_251_cov_0.876404_g14650_i0 PRJNA902848 14700 251 0.876404 2.19977404 Fibrobacterota bacterium 2052160 Bacteria Bacteria 93.6 1.46e-21   NR MFH0921138.1 2052160 g14650 i0 59 0.99203187250996006 83 34 99.2 0 250 2 117 199 MFH0921138.1 Holliday junction branch migration protein RuvA [Fibrobacterota bacterium] diamond 249 93.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;