RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA902848", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA902848 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11085572 11085572 PRJNA902848_P_NODE_16009_length_248_cov_3.542857_g15959_i0 PRJNA902848 16009 248 3.542857 8.78628536 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 274 4.399999999999999e-69   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g15959 i0 89.401 79.4879032258064 217 23 88 0 1 217 217 1 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 19713 274 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21283908 21283908 PRJNA902848_P_NODE_1577_length_567_cov_1.836032_g1528_i0 PRJNA902848 1577 567 1.836032 10.41030144 Vannella sp. 1973054 Discosea other_Eukaryota 990 0   NTclustered gi|1376098864|gb|MH182996.1| 1973054 g1528 i0 97.887 89.8130511463845 568 11 100 1 1 567 1274 707 Vannella sp. isolate DD141 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 50924 990 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
21284117 21284117 PRJNA902848_P_NODE_7037_length_328_cov_1.223529_g6987_i0 PRJNA902848 7037 328 1.223529 4.01317512 Vannella simplex 197532 Discosea other_Eukaryota 601 2.4399999999999998e-167   NTclustered gi|25991989|gb|AF486078.1| 197532 g6987 i0 99.695 100.917682926829 328 1 100 0 1 328 426 99 Vannella simplex isolate 51 small subunit ribosomal RNA gene, partial sequence blastn 33101 601 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
22559031 22559031 PRJNA902848_P_NODE_5058_length_370_cov_1.303030_g5008_i0 PRJNA902848 5058 370 1.30303 4.821211 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 300 1.14e-76   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g5008 i0 83.974 74.7054054054054 312 50 84 0 59 370 417 106 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 27641 300 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27024188 27024188 PRJNA902848_P_NODE_2262_length_496_cov_2.449173_g2212_i0 PRJNA902848 2262 496 2.449173 12.14789808 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 174 4.61e-52   NR XP_004352065.1 1257118 g2212 i0 55.6 2.93951612903226 162 72 98 0 7 492 1 162 XP_004352065.1 ribosomal protein S7e, putative [Acanthamoeba castellanii str. Neff] diamond 1458 174 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28414011 28414011 PRJNA902848_P_NODE_15206_length_250_cov_0.881356_g15156_i0 PRJNA902848 15206 250 0.881356 2.20339 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 139 8.16e-41   NR XP_004339588.1 1257118 g15156 i0 85.4 9.84 82 12 98.4 0 246 1 5 86 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 2460 139 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29116239 29116239 PRJNA902848_P_NODE_9548_length_290_cov_1.437788_g9498_i0 PRJNA902848 9548 290 1.437788 4.1695852 root 1 Root_unresolved Root_unresolved 191 4.97e-56   NR NP_042541.1 5755 g9498 i0 93.8 140.027586206897 96 6 99.3 0 3 290 247 342 NP_042541.1 H(+)-transporting ATPasesubunit 1 [Acanthamoeba castellanii] diamond 40608 191 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29992743 29992743 PRJNA902848_P_NODE_2651_length_469_cov_1.176768_g2601_i0 PRJNA902848 2651 469 1.176768 5.51904192 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 132 1.43e-33   NR XP_004341586.1 1257118 g2601 i0 48.5 1.62473347547974 130 64 81.9 2 468 85 272 400 XP_004341586.1 elongation factor 1-gamma family protein [Acanthamoeba castellanii str. Neff] diamond 762 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30466898 30466898 PRJNA902848_P_NODE_14933_length_250_cov_0.881356_g14883_i0 PRJNA902848 14933 250 0.881356 2.20339 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.4 5.57e-18   NR XP_004339035.1 1257118 g14883 i0 54.9 0.984 82 37 98.4 0 3 248 292 373 XP_004339035.1 leucine zipperef-hand containing transmembrane protein 1, putative, partial [Acanthamoeba castellanii str. Neff] diamond 246 87.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;