RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA902515" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA902515 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9809290 9809290 PRJNA902515_P_NODE_5088_length_344_cov_1.667897_g5065_i0 PRJNA902515 5088 344 1.667897 5.73756568 Treponema medium 58231 Bacteria Bacteria 542 1.58e-149   NTclustered gi|1996291085|gb|CP027017.1| 58231 g5065 i0 95.058 3 344 17 100 0 1 344 2642546 2642889 Treponema medium strain T19 chromosome, complete genome blastn 1032 542 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium
31952332 31952332 PRJNA902515_P_NODE_12457_length_250_cov_0.881356_g12434_i0 PRJNA902515 12457 250 0.881356 2.20339 Spirochaetes bacterium GWB1_59_5 1802176 Bacteria Bacteria 99.8 2.72e-22   NR OHD22916.1 1802176 g12434 i0 59.8 0.984 82 33 98.4 0 3 248 67 148 OHD22916.1 MAG: hypothetical protein A2Y38_19835, partial [Spirochaetes bacterium GWB1_59_5] diamond 246 99.8 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetes bacterium GWB1_59_5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;