RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA902515" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA902515 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17824153 17824153 PRJNA902515_P_NODE_9034_length_277_cov_1.200980_g9011_i0 PRJNA902515 9034 277 1.20098 3.3267146 Bacteria 2 Bacteria Bacteria 496 9.8e-136   NTclustered gi|2805374337|gb|CP169431.1| 195 g9011 i0 98.917 27.9386281588448 277 3 100 0 1 277 137787 138063 Campylobacter coli strain CVM N17C336 plasmid pN17C336-1, complete sequence blastn 7739 501 0.99001996007984 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
28540405 28540405 PRJNA902515_P_NODE_15847_length_242_cov_1.680473_g15824_i0 PRJNA902515 15847 242 1.680473 4.06674466 Helicobacter sp. UBA34 218 Bacteria Bacteria 161 8.329999999999999e-46   NR WP_300791197.1 1946588 g15824 i0 98.8 0.991735537190083 80 1 99.2 0 242 3 51 130 WP_300791197.1 major outer membrane protein, partial [Helicobacter sp. UBA3407] diamond 240 161 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. UBA3407

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;