contig_metadata
14 rows where bioproject = "PRJNA902515" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5984632 | 5984632 | PRJNA902515_P_NODE_5545_length_333_cov_1.200000_g5522_i0 | PRJNA902515 | 5545 | 333 | 1.2 | 3.996 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 604 | 1.9199999999999991e-168 | NTclustered | gi|2566447905|gb|CP114597.1| | 239935 | g5522 | i0 | 99.399 | 99.2762762762763 | 333 | 2 | 100 | 0 | 1 | 333 | 692406 | 692738 | Akkermansia muciniphila strain MmAkkUCB1 chromosome, complete genome | blastn | 33059 | 604 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 7259548 | 7259548 | PRJNA902515_P_NODE_8646_length_282_cov_1.373206_g8623_i0 | PRJNA902515 | 8646 | 282 | 1.373206 | 3.87244092 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 516 | 7.67e-142 | NTclustered | gi|1805960388|gb|CP029703.1| | 239935 | g8623 | i0 | 99.645 | 69 | 282 | 1 | 100 | 0 | 1 | 282 | 1047222 | 1046941 | Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome | blastn | 19458 | 516 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 8899537 | 8899537 | PRJNA902515_P_NODE_11647_length_252_cov_0.871508_g11624_i0 | PRJNA902515 | 11647 | 252 | 0.871508 | 2.19620016 | Akkermansia | 239934 | Bacteria | Bacteria | 466 | 6.89e-127 | NTclustered | gi|1888387165|gb|CP058562.1| | 239935 | g11624 | i0 | 100 | 100 | 252 | 0 | 100 | 0 | 1 | 252 | 485221 | 485472 | Akkermansia muciniphila strain AK32 chromosome, complete genome | blastn | 25200 | 466 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 11084879 | 11084879 | PRJNA902515_P_NODE_15529_length_243_cov_0.917647_g15506_i0 | PRJNA902515 | 15529 | 243 | 0.917647 | 2.22988221 | Prosthecobacter fusiformis | 48464 | Bacteria | Bacteria | 350 | 6.94e-92 | NTclustered | gi|12583974|gb|AF245378.1|AF245378 | 48464 | g15506 | i0 | 92.593 | 67.7736625514403 | 243 | 18 | 100 | 0 | 1 | 243 | 1353 | 1111 | Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence | blastn | 16469 | 350 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter fusiformis | |
| 13634950 | 13634950 | PRJNA902515_P_NODE_14791_length_245_cov_0.906977_g14768_i0 | PRJNA902515 | 14791 | 245 | 0.906977 | 2.22209365 | Opitutus | 178440 | Bacteria | Bacteria | 95.9 | 3.27e-22 | NR | MBA3849379.1 | 1913982 | g14768 | i0 | 63.9 | 1.75102040816327 | 72 | 26 | 88.2 | 0 | 216 | 1 | 26 | 97 | MBA3849379.1 hypothetical protein [Opitutus sp.] | diamond | 429 | 96.7 | 0.991726990692865 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. | |
| 17459476 | 17459476 | PRJNA902515_P_NODE_15734_length_243_cov_0.917647_g15711_i0 | PRJNA902515 | 15734 | 243 | 0.917647 | 2.22988221 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 444 | 3.09e-120 | NTclustered | gi|1805960388|gb|CP029703.1| | 239935 | g15711 | i0 | 99.588 | 93.9794238683128 | 243 | 1 | 100 | 0 | 1 | 243 | 2255604 | 2255846 | Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome | blastn | 22837 | 444 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 20372962 | 20372962 | PRJNA902515_P_NODE_15776_length_243_cov_0.917647_g15753_i0 | PRJNA902515 | 15776 | 243 | 0.917647 | 2.22988221 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 139 | 2.97e-36 | NR | MBX3472275.1 | 2026780 | g15753 | i0 | 83.1 | 2.8641975308642 | 77 | 13 | 95.1 | 0 | 9 | 239 | 852 | 928 | MBX3472275.1 RHS repeat protein [Planctomycetota bacterium] | diamond | 696 | 139 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 21283114 | 21283114 | PRJNA902515_P_NODE_11937_length_251_cov_0.876404_g11914_i0 | PRJNA902515 | 11937 | 251 | 0.876404 | 2.19977404 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 453 | 5.34e-123 | NTclustered | gi|1805953094|gb|CP029699.1| | 239935 | g11914 | i0 | 99.203 | 98.00796812749 | 251 | 2 | 100 | 0 | 1 | 251 | 2749571 | 2749321 | Akkermansia muciniphila strain EB-AMDK-25 chromosome, complete genome | blastn | 24600 | 453 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 21283148 | 21283148 | PRJNA902515_P_NODE_13397_length_248_cov_0.891429_g13374_i0 | PRJNA902515 | 13397 | 248 | 0.891429 | 2.21074392 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 453 | 5.2600000000000005e-123 | NTclustered | gi|1779063263|dbj|AP021898.1| | 239935 | g13374 | i0 | 99.597 | 99.5201612903226 | 248 | 1 | 100 | 0 | 1 | 248 | 2741149 | 2740902 | Akkermansia muciniphila JCM 30893 DNA, complete genome | blastn | 24681 | 453 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 25107332 | 25107332 | PRJNA902515_P_NODE_16460_length_205_cov_5.636364_g16437_i0 | PRJNA902515 | 16460 | 205 | 5.636364 | 11.5545462 | uncultured sludge bacterium A35 | 117472 | Bacteria | Bacteria | 113 | 8.1e-21 | NTclustered | gi|13171302|gb|AF234744.1| | 117472 | g16437 | i0 | 85.586 | 9.10243902439024 | 111 | 13 | 54 | 3 | 82 | 192 | 1498 | 1391 | Uncultured sludge bacterium A35 16S ribosomal RNA gene, partial sequence | blastn | 1866 | 113 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | uncultured sludge bacterium A35 | |||
| 29613340 | 29613340 | PRJNA902515_P_NODE_15210_length_244_cov_0.912281_g15187_i0 | PRJNA902515 | 15210 | 244 | 0.912281 | 2.22596564 | Opitutales bacterium | 2026772 | Bacteria | Bacteria | 161 | 1.5499999999999998e-48 | NR | MDE6431933.1 | 2026772 | g15187 | i0 | 97.5 | 0.995901639344262 | 81 | 2 | 99.6 | 0 | 243 | 1 | 21 | 101 | MDE6431933.1 hypothetical protein [Opitutales bacterium] | diamond | 243 | 161 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutales bacterium | |||
| 29834689 | 29834689 | PRJNA902515_P_NODE_14691_length_245_cov_0.906977_g14668_i0 | PRJNA902515 | 14691 | 245 | 0.906977 | 2.22209365 | Opitutales bacterium | 2026772 | Bacteria | Bacteria | 155 | 1.01e-44 | NR | MDE6432480.1 | 2026772 | g14668 | i0 | 97.5 | 0.991836734693878 | 81 | 2 | 99.2 | 0 | 2 | 244 | 49 | 129 | MDE6432480.1 type III secretion inner membrane ring lipoprotein SctJ [Opitutales bacterium] | diamond | 243 | 155 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutales bacterium | |||
| 31319731 | 31319731 | PRJNA902515_P_NODE_15935_length_242_cov_0.923077_g15912_i0 | PRJNA902515 | 15935 | 242 | 0.923077 | 2.23384634 | Thalassoglobus sp. JC818 | 3232136 | Bacteria | Bacteria | 85.9 | 6.79e-18 | NR | WP_367058768.1 | 3232136 | g15912 | i0 | 58.1 | 1.84710743801653 | 74 | 29 | 90.5 | 2 | 24 | 242 | 192 | 264 | WP_367058768.1 peptide chain release factor N(5)-glutamine methyltransferase [Thalassoglobus sp. JC818] | diamond | 447 | 85.9 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Thalassoglobus | Thalassoglobus sp. JC818 | |
| 32427057 | 32427057 | PRJNA902515_P_NODE_13899_length_247_cov_0.896552_g13876_i0 | PRJNA902515 | 13899 | 247 | 0.896552 | 2.21448344 | Opitutaceae bacterium | 2006848 | Bacteria | Bacteria | 115 | 3.91e-31 | NR | MCU0792379.1 | 2006848 | g13876 | i0 | 74.6 | 0.862348178137652 | 71 | 18 | 86.2 | 0 | 2 | 214 | 56 | 126 | MCU0792379.1 putative zinc-binding protein [Opitutaceae bacterium] | diamond | 213 | 115 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;