RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA902515", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA902515 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2156569 2156569 PRJNA902515_P_NODE_13502_length_248_cov_0.891429_g13479_i0 PRJNA902515 13502 248 0.891429 2.21074392 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 448 2.4499999999999996e-121   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g13479 i0 99.194 2 248 2 100 0 1 248 2747519 2747766 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 496 448 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
5984415 5984415 PRJNA902515_P_NODE_12105_length_251_cov_0.876404_g12082_i0 PRJNA902515 12105 251 0.876404 2.19977404 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 289 1.59e-73   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g12082 i0 87.805 1.9601593625498 246 30 98 0 6 251 831131 830886 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 492 289 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;