RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA900999" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900999 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
878128 878128 PRJNA900999_S_NODE_5601_length_187_cov_7.962025_g5545_i0 PRJNA900999 5601 187 7.962025 14.88898675 Pendulispora brunnea 2905690 Bacteria Bacteria 213 6.94e-51   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g5545 i0 96.85 80.7754010695187 127 4 70 0 35 161 7409374 7409500 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 15105 213 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
10174562 10174562 PRJNA900999_S_NODE_2668_length_248_cov_5.780822_g2612_i0 PRJNA900999 2668 248 5.780822 14.33643856 Sorangium 39643 Bacteria Bacteria 326 1.2e-84   NTclustered gi|1338588479|gb|CP012673.1| 56 g2612 i0 93.243 126.064516129032 222 14 89 1 28 248 3448863 3449084 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 31264 326 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
12357062 12357062 PRJNA900999_S_NODE_5810_length_185_cov_3.858974_g5754_i0 PRJNA900999 5810 185 3.858974 7.1391019 uncultured Haliangium sp. 373538 Bacteria Bacteria 200 5.329999999999998e-47   NTclustered gi|310755276|gb|HQ213166.1| 373538 g5754 i0 93.939 157.924324324324 132 8 71 0 24 155 947 1078 Uncultured Haliangium sp. clone 3_E01 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 29216 200 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium uncultured Haliangium sp.
16548537 16548537 PRJNA900999_S_NODE_673_length_387_cov_236.846369_g618_i0 PRJNA900999 673 387 236.846369 916.59544802999994 Polyangiaceae 49 Bacteria Bacteria 364 4.179999999999998e-96   NTclustered gi|908353314|gb|CP012159.1| 52 g618 i0 86.93 136.793281653747 329 38 84 5 3 328 1431070 1431396 Chondromyces crocatus strain Cm c5, complete genome blastn 52939 366 0.994535519125683 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
22923679 22923679 PRJNA900999_S_NODE_3958_length_214_cov_9.697297_g3902_i0 PRJNA900999 3958 214 9.697297 20.75221558 Polyangiaceae 49 Bacteria Bacteria 239 1.35e-58   NTclustered gi|1566478966|gb|CP012672.1| 56 g3902 i0 87.204 365.528037383178 211 26 98 1 1 210 3689442 3689652 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 78223 239 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
24197508 24197508 PRJNA900999_S_NODE_2719_length_246_cov_11.230415_g2663_i0 PRJNA900999 2719 246 11.230415 27.6268209 Corallococcus 83461 Bacteria Bacteria 220 5.76e-53   NTclustered gi|1561763003|gb|CP034669.1| 184914 g2663 i0 85.253 185.243902439024 217 29 87 3 5 219 142631 142416 Corallococcus coralloides strain B035 chromosome, complete genome blastn 45570 220 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
26960736 26960736 PRJNA900999_S_NODE_6482_length_177_cov_3.662162_g6426_i0 PRJNA900999 6482 177 3.662162 6.48202674 Polyangiaceae bacterium 2268199 Bacteria Bacteria 59.3 2.14e-8   NR MBK8257436.1 2268199 g6426 i0 56.8 0.745762711864407 44 19 74.6 0 157 26 507 550 MBK8257436.1 hypothetical protein [Polyangiaceae bacterium] diamond 132 59.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;